Rmai002497.1
Basic Information
- Insect
- Rhopalosiphum maidis
- Gene Symbol
- CDC5L
- Assembly
- GCA_003676215.3
- Location
- NC:68824672-68832384[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-16 7.9e-14 50.9 1.5 2 46 9 54 8 54 0.97 2 3 3.9e-12 2.7e-09 36.4 0.1 1 45 60 103 60 104 0.93 3 3 9.3 6.4e+03 -3.2 0.0 3 11 620 628 619 634 0.79
Sequence Information
- Coding Sequence
- ATGCCGCGAATTATGATCAAAGGTGGCGTTTGGCGCAACACCGAGGATGAGATTCTTAAAGCAGCAGTTATGAAATATGGCAAAAATCAATGGTCACGTATTGCATCATTATTACATCGTAAATCTGCAAAACAATGTAAGGCACGTTGGTTTGAATGGCTTGAtccaagtattaaaaaaactgaatGGAGTCGAGAGGAAGATGAAAAGCTTTTGCATCTTGCTAAACTTATGCCTACACAATGGCGTACCATTGCTCCAATTGTTGGACGTACAGCTTCACAATGTTTGGAaagatatgaatatttattGGATCAAGCCCAAAGAAAAGAAGATGGTGAGGAAGTGGGAGATGATCCAAGAAAATTAAAACCCGGTGAAATTGATCCAAATCCAGAGACAAAACCTGCGCGTCCTGATCCCAAAGATATGGATGAAGATGAGTTGGAAATGTTATCTGAAGCAAGAGCTCGTTTAGCTAATACACAAGGGAAAAAGGCAAAACGTAAAGCTCGTGAGAAACAATTAGAAGAAGCTAGAAGACTTGCTGCATtacaaAAACGGAGAGAATTACGTGCTGCTGGTATAGGTGTTGGAAGAGGCAATAAGCGAAAGCGTGGTATAGACTATAATGCTGAAATaccgtttgaaaaaaaaccagCTTTAGGGTTTTATGATACTGCCAATGAGGAGGTTGATCCACTTGCACCagattttagaaaattgaGACAACAAAATTTAGATGGAGAACTACGAGTTGAAATTGAagagAGGGAAAGAAAGAAAGACAAAGCTAAGCTTAAGCAACGTAAGGAAAATGAAGTTCCATTAGCTATGTTAAATAATCAAGAACCTATTAGAAAAATGAGTAAACTTGTTTTACCAGAACCTCAAATTTCTGATCaagaATTACAACAAGTTGTTAAATTAGGGCGAGCCAGTGAAATGGCACGAGAAATAGCAATGGAAAATGGTCCTCAACAAGCTTCAGATGCATTATTGTCAGATTATACAccttcaattaataatattcctgGCCGCACTCCAAGAACTCCATCTGTTTCAACTGACAAAATTTTACaaGacgcacaaaatattatggctCTAGCACATGTAGATACTCCTTTAAAAGGAGGTCTTAATAGAGAATTGCAAAATGTTGATTTCAATGGTGTCACCCCACAACGACAATTGATTACAACacctaatacaattttaggtACTCCACTTTCACAAACTGCTAATGATGGTTTCCAAACTCCACAAAGTGATAGATCACTAGTAAAAGCTGGTATGCTTACACCTACTCCTTTAAGGGATCAATTAAGCATCAATCGTTCAGATTCTATGgaagtagatattataaatacacccCAAGCTATGAAAAACTACCAAAATCAAGTAAAAGAACAGTTGAAAGCAGGGTTAAGTACATTGCCACAAcccaaaaatgattttgaaattgttgtGCCAGAAGATCAGCCTGAAGATGAAGAAACTGAAGTTCAAAAAGATTTTGTAGAAGATCAGTCTGATGTAGAAATGCGTAGTGCTGAAGAACTACTAGCTCGtcGGCAATTAGAAATGAAGTTACGATCTCAAGTAATCCAACGATGTTTACCTCGTCCACCAGatactaatattgttttgagaCCTTTGAATTCAGAGCCACCTCTTACAGATCTTCAAaggGCTGAAGAATTGATTAAACAAGAAATGATTACAATGCTTCATTACGATGCTGTCCGTAGCCCTCTGCCACCAGAAGTTGCTACACTCACTCAAAGTGGTCCCAAAAAACAACCAATCCTAACTGAAACTCAACATTTGGCTTATTTACAAGCACACCCATACCAACAATTTACTGAAGAAGAAAtggaaaatgcaAAACAAATCTTAATGAAAGAAATGGAAATTGTTAAGCAAGGTATGAATCATGGTGAATTGTCATTAGACTCATTTACTCAAGTATGGGGTGAGTGTTTGGGCCAAGTATTATTCCTGCCAAATCAAAATCGTTATACAAGAGCAAATTTAGCCAGTAAAAAAGATAGAATTGAATCGCTGGAAAAAAAACTGGAACAGAATAGAAACCATATGACTAAAGAAGCTAAAAAAGCtggaaaaatggaaaaaaaaattaaaattattcttggAGGATATCAAactcGATCCCAAGGTCTTATCAAACAGTTCATAACCAGCGTTGATGAAATTGAACAAGGACATTTAGAATTATcaacttttcaatttttgcaACGACAGGAAGAATCTGCTATACCAAAACGACTAcagtcattAACTGATGATGTAGATCGTCAAAAAGAACGAGAAAAAATTCTACAACAAAAGTTCTTGGACCTTGAAACACGGTGGAAAGAATTACAAATTGGAAATGATTGA
- Protein Sequence
- MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWFEWLDPSIKKTEWSREEDEKLLHLAKLMPTQWRTIAPIVGRTASQCLERYEYLLDQAQRKEDGEEVGDDPRKLKPGEIDPNPETKPARPDPKDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIGVGRGNKRKRGIDYNAEIPFEKKPALGFYDTANEEVDPLAPDFRKLRQQNLDGELRVEIEERERKKDKAKLKQRKENEVPLAMLNNQEPIRKMSKLVLPEPQISDQELQQVVKLGRASEMAREIAMENGPQQASDALLSDYTPSINNIPGRTPRTPSVSTDKILQDAQNIMALAHVDTPLKGGLNRELQNVDFNGVTPQRQLITTPNTILGTPLSQTANDGFQTPQSDRSLVKAGMLTPTPLRDQLSINRSDSMEVDIINTPQAMKNYQNQVKEQLKAGLSTLPQPKNDFEIVVPEDQPEDEETEVQKDFVEDQSDVEMRSAEELLARRQLEMKLRSQVIQRCLPRPPDTNIVLRPLNSEPPLTDLQRAEELIKQEMITMLHYDAVRSPLPPEVATLTQSGPKKQPILTETQHLAYLQAHPYQQFTEEEMENAKQILMKEMEIVKQGMNHGELSLDSFTQVWGECLGQVLFLPNQNRYTRANLASKKDRIESLEKKLEQNRNHMTKEAKKAGKMEKKIKIILGGYQTRSQGLIKQFITSVDEIEQGHLELSTFQFLQRQEESAIPKRLQSLTDDVDRQKEREKILQQKFLDLETRWKELQIGND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01037702;
- 90% Identity
- iTF_01037702;
- 80% Identity
- -