Basic Information

Insect: Rhopalosiphum maidis
Gene Symbol: bab1
Assembly: GCA_003676215.3
Location: NC:49140878-49182060[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 9.8e-16 1.4e-12 46.5 0.0 1 41 395 436 395 440 0.93

2 2 0.67 9.9e+02 -1.0 0.3 6 15 525 534 521 550 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	9.8e-16	1.4e-12	46.5	0.0	1	41	395	436	395	440	0.93
2	2	0.67	9.9e+02	-1.0	0.3	6	15	525	534	521	550	0.84

Sequence Information

Coding Sequence: ATGCAACCGAGCAACGGCTCCAAAGACGTGCCGTCGGCGGCGGCCGAGAAGACTTGCGGCGCGACAGGCGGTTCCGGCAACCAGCAGTTCTGCTTGCGTTGGAACAACTACCAGAGCAACCTGACCAACGTGTTCGACCAACTGCTGCAGAACGGCACGTTCGTGGACGTGACGATCGCCTGTGACGGTCATACACTCAAAGCGCACAAGATCGTGCTGTCCGCATGCAGCCCATACTTCCAGAGCATGCTGGCCGAGAATAAGTGCAAGCACCCGATCGTCATATTGAAAGACGTCCAGTGGCCCGAACTTAGGGCAGTCGTCGACTTCATGTACAAGGGAGAGATAAACGTTTATCAGGAACAGATTGGCCCGCTGTTGCGCGTCGCCGAGACACTGAAAGTCCGCGGTTTGGCCGACGTCAGCAACGAACAACTCACCGGCGGTGGTGGGTGTGAACCACAAGCCGCGGCCACTGTGGTGACACCCACGACTGTAGCACCCGAATCTCCCAAACAGCCAGCCCGGAAGCGGCACAGGCTGTCACCACCGGCGGCTAGCCCAGAGTCTGTCATATCCGACATGGGATCGTCGGTCGCGGACACGCCGCTCAACTTGCACCACATGCCACCACCTCCAGCCCCCCATCAACAGCAGCAGGCGCAGTCGCAATTATCGCACGTGCACCAccaacaacaacagcagcaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacatcagcagcagcaacagcagcagcagcaacaacaacagcagcaacaacaccaacaacagcagcagcagcagcagcagcagcagcagcagcagtcgTCACAACAGCCACCGGCACCACAGGCCATGCCGCCGTCCGCCTCGTCCGcttcatcgtcgtcgtcgtcatcgtcatcgATACCACCGCCGAGCAGCGTGGCCGACGATATGGAGATAAAGCCGGGTATCGCCGAGATGATACGCGAGGAAGAAAGAGCCAAAATGTTTGAAAGTTCTCAGGCCTGGCTCGCATCCACGTCCTCGCCAATGACttCCGACAGTTACCAGTACCAGTTGCAGTCCATGTGGCAAAAGTGCTGGAACACCAACCAGAGCCTGGTGCACAACCTGCGGTTCAGAGAGCGTGGTCCGCTCAAGTCGTGGAGACCAGAAACGATGGCCGAGGCTATTCTGTCCGTGCTCAAGGAGGGCCTTTCGCTGTCGCAGGCAGCCCGCAAGTACGACATCCCGTATCCAACGTTCGTGCTGTACGCCAACCGGGTGCACAACTTGCTCGGTCCATCCGCAGACGGCGGCGCAGaCTTAAGGCCTAAAGGCAGAGGACGTCCTCAAAGGATATTGTTAGGATTTTGGCCAGAAGATCACATTCAAAATGTAATCAGGACTGTTGTGTTTAGAGACGCACAAAACATCAAAGAAGAAGCATTACACCTTTACCCAAGAATACcgtgtttatcCGACCCAATGTCTGGTGGTCACTATGGTAACAACGCGGTTCAGTCGGTTGAAGGTCCTGTGTCGCCAAACTCTGCCGCGGCCGCTGTGGCTGCTGTCGCGCAGGGTATACGGCAGCAAATGATGGCCGCCGCCGGACATAACATCTCTCCTTCATCGGGTGTTGACGCGTTCGCCCTACTCGCCTCTTCGCACCTACCCAGTCCGGCTGACATGTCACCCAATTCGTCTCCACCCGATTCACCGTTAGTTTCCAACAACAACGTCGAGgTGAGCCTTAGCGGTTACAAGCGATCCATCGACCACTCCAACCAAGATAACGTGTTCGTCGAAGACATTGATGAGCTCGTGAAGAACAGCCATTGTACTGGAGGCTCGTCAATGGGCAACAACATCGATCAGCAGCCGTTGCCGTTAGTCATCGAGCAACGgactgaataa
Protein Sequence: MQPSNGSKDVPSAAAEKTCGATGGSGNQQFCLRWNNYQSNLTNVFDQLLQNGTFVDVTIACDGHTLKAHKIVLSACSPYFQSMLAENKCKHPIVILKDVQWPELRAVVDFMYKGEINVYQEQIGPLLRVAETLKVRGLADVSNEQLTGGGGCEPQAAATVVTPTTVAPESPKQPARKRHRLSPPAASPESVISDMGSSVADTPLNLHHMPPPPAPHQQQQAQSQLSHVHHQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQQQQQQQQQHQQQQQQQQQQQQQQSSQQPPAPQAMPPSASSASSSSSSSSSIPPPSSVADDMEIKPGIAEMIREEERAKMFESSQAWLASTSSPMTSDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAILSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNLLGPSADGGADLRPKGRGRPQRILLGFWPEDHIQNVIRTVVFRDAQNIKEEALHLYPRIPCLSDPMSGGHYGNNAVQSVEGPVSPNSAAAAVAAVAQGIRQQMMAAAGHNISPSSGVDAFALLASSHLPSPADMSPNSSPPDSPLVSNNNVEVSLSGYKRSIDHSNQDNVFVEDIDELVKNSHCTGGSSMGNNIDQQPLPLVIEQRTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01032794;
90% Identity: iTF_01346551;
80% Identity: iTF_01304304;