Rmai008815.1
Basic Information
- Insect
- Rhopalosiphum maidis
- Gene Symbol
- bab2
- Assembly
- GCA_003676215.3
- Location
- NC:1140437-1148328[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.9e-12 8.7e-09 34.4 0.0 2 38 434 471 433 476 0.89 2 4 5.1e-12 7.5e-09 34.6 0.1 2 39 488 525 487 528 0.94 3 4 8.6e-17 1.3e-13 49.9 0.0 3 45 544 587 542 587 0.97 4 4 2.5e-17 3.7e-14 51.6 0.1 1 43 594 637 594 639 0.96
Sequence Information
- Coding Sequence
- ATGACAGTTAATGGCCAGCACTACTGTCTGCGATGGAACAATTACCAATCAAATATGACCTCTGTGTTTCACCAGCTTCTTCGAAATGAATCGTTTGTTGATGTTACTCTTGCTTGCAATGAGAGCACGCTCAAAGCACATAaaGTGGTCTTATCGGCTTGTTCGTCttactttcaaaaattattgatggATAACCCATGTAAACATCCAACCATTATATTGCCTTATGATGTTTGTTTTAACGATCTCAAGTTCATCATAGAGTTTGTATATAGGGGCGAGATAGATGTGTCTCAAGCTGAATTGCAATCTCTTCTGAAGACAGCAGACCAGTTAAAGATTAAAGGACTATGTGAAGTTCCTGAAGATGAACGTGATACATCTATTGTGGCTGAAGTAACTCCTTTGGGGCCTTTAAAAAGTGGTGGAAGAGTGTTCACAAAATTACAGCGCAGAACTTCTccttattcaaaaaaattgagtcCTAATCAAATTCAGCAGGATCAGTTTAATCGAAGTTATTATCGAATTGAACAATCAGGTTTTGCACCTATTAATGTTGATCAAGAAAACAAATCTATTAATACTATCCATTGCATGACTGTAGCAACTTCAACTGAAGATGATGAGAAAGAAATTAAGTCAACACTAACAGATTTACCAGTGGTCATACTAGAACCACATCcttcattaaatttacaagCCCAACAACAGCCTCAGATAGTACACATACCAATACCACCAtcacagcagcagcagcaacaacaacaacaacaacaacaacaactgaGTCATGTAACACAACATACAAATCAACCACAGTTGCAACAAGCATCAGTTCAAACTCATtcacaaATGATTATCACAACAGGTCCAGTTATGACAGTGAATGAAGCTGATATTTCACCTGATATACAGCCTGTTGGGCCAAGGGCAACACCAGTACcagttaaaaataacacaagtCCCTCATCAACACCTACACATAGAGATATGGCTGttggtACAACATGTTCAAATGATATGATGAGAAGTGATGGAAATGAGAGAAAATTTGAAAGTGCTAAATTTGAAACACTTCGTACTATTGATCAATCATCAGATGCAATTGGAATAGAAAGACAACATTCTAATgatcgtAATATAAATGATGAAGACAATTCAATGCATACAATGATGATAACACCCGAACTTTTGGGATTATTACCAAATTCTTCTAATGCAGGAGatgtCAGTGAAGATAGTTCtagtaacaatattaacaaacaGTATGGTACAAATGGTGGAAAAGGATGGACAGCTGATGACATGGAAAACGCCTTAGAAGCATTACGTTCACATAATATGTCTTTAACCAAAGCATCCATAACATTTGGAATTCCTTCTACAACATTATGGCAGCGGGCTCATCGAGCTGGTATAGATACTCCTAAAAAAGATGGACCTGCTAAATCTTGGAACGATGAAGCTTTAAACATTGCATTAGATGCTCTGCGCACTGGCACTATTTCAGCAAATAAAGCTAGTAAAGCATATGGTATACCTAGTAGTACATTATATAAGATTGCACGACGAGAAGGAATTAGATTAGCTGCTCCATTCAATGCAGCACCAACTTCTTGGGGTCAGGAACAATTAGACCAAGCATTGCATGCCATACGAACTGGGCAAACAACTGTACAACGAGCTGCAGCCGACTATGGTATTCCTTCTGGAACACTATATGGCCGATGTAAACGCGAGAAAATTGAATTGTCCCGCAGCAATCCAACCCCATGGTCTGAGGACGCTATGATGGAAGCTCTGGAGTCTGTACGATTAGGTCATATGAGTATTAATCAGGcagctatacattataatctaCCATATTCTTCATTATATGGACGTTTCAAAAGGGTGAAATACGGAGCTGGACATCCCAATGATGATTGTGATGATATGATCGATTCAGATACACAAAGTGAACAACAGCACATtcaacaacagcagcagcagcagcagcagcaggcAAATCAGCAAGTACAGGCTACTCCAGTGTCCCAAATAATGTTGGTTCAATATCCAGCACCACAAATTCAAATGTACCAACAACATCCAACTCATTCAACCACTAGTTGA
- Protein Sequence
- MTVNGQHYCLRWNNYQSNMTSVFHQLLRNESFVDVTLACNESTLKAHKVVLSACSSYFQKLLMDNPCKHPTIILPYDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPEDERDTSIVAEVTPLGPLKSGGRVFTKLQRRTSPYSKKLSPNQIQQDQFNRSYYRIEQSGFAPINVDQENKSINTIHCMTVATSTEDDEKEIKSTLTDLPVVILEPHPSLNLQAQQQPQIVHIPIPPSQQQQQQQQQQQQQLSHVTQHTNQPQLQQASVQTHSQMIITTGPVMTVNEADISPDIQPVGPRATPVPVKNNTSPSSTPTHRDMAVGTTCSNDMMRSDGNERKFESAKFETLRTIDQSSDAIGIERQHSNDRNINDEDNSMHTMMITPELLGLLPNSSNAGDVSEDSSSNNINKQYGTNGGKGWTADDMENALEALRSHNMSLTKASITFGIPSTTLWQRAHRAGIDTPKKDGPAKSWNDEALNIALDALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWGQEQLDQALHAIRTGQTTVQRAAADYGIPSGTLYGRCKREKIELSRSNPTPWSEDAMMEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRVKYGAGHPNDDCDDMIDSDTQSEQQHIQQQQQQQQQQANQQVQATPVSQIMLVQYPAPQIQMYQQHPTHSTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00184731;
- 90% Identity
- iTF_01330472;
- 80% Identity
- iTF_01304319;