Rmai003860.1
Basic Information
- Insect
- Rhopalosiphum maidis
- Gene Symbol
- arid3a
- Assembly
- GCA_003676215.3
- Location
- NC:7254859-7336210[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-26 2.4e-23 81.7 0.0 2 89 241 326 240 326 0.96 2 2 5 7.3e+03 -3.1 0.7 69 86 412 431 395 432 0.54
Sequence Information
- Coding Sequence
- ATGCTGAATAGTGAACCTTCGTCTGAGTTAGATAAACAACAGCGCAACGCGCAGACCGAACAAGTGAAGATGGCCGCCACTGAAGCCGGAAGCCCGAGACGACTGGGACTCAACCTCAACCTGAGCGTACAGCCACACGCGACCGCTTATCACTGGCCGCACTCGACAGTGGCCGAAGACACGTCACCATCCCGGTCCAAGGGCTGCACGGACGAAgatgatgacgacgacgaagaCGATCGCGACATGGACGACCGCGATATGGACGACGATGAAATGATGATGGACTGTCGGCAGGACGAGGATTGTTCGCCCGAGGATGAACAAGACATTTTGGAAATGCAGcgcgAGGAACGCGAAACCCTCAATCAGCTCGCCAGGCAGTTGGCATCTGGTTCGCGGCTCATAACCCCGATGCTCCAGCATCTAGTGTACCAACACCCAGGGCTATCCGTACAACCGTCACCGATGCACCAACAGCAACTGCAACAGCAGCCGTCCTCCGTGGCCGTGTCATTGACAACGGCCGCGCTCAACAGACACGCGACGGCCGCCGCTGCTGACCTGTCGCCAAAGTCCAGTCACTCGGGCGACGTGCCAATGTCCGGCGGTCGTTCCACTGAAGTTCAGTCACCGTCCGCGGCTCGGAATAACGAGGCGCAGTCATGGACGTTCGAAGAACAGTTCCGACAGctATACTCGGCGGGCAGCGAATCCGACAGACGGACCTTTCTAGACTCGCTGTTCAGTTTTATGCAAGAACAAGgaacTCCAATCAGTCGTTTACCCATCATGGCCAAGCGCGTGTTGGATCTGTACACCCTGTACAAGTTGGTTGTCCAGAGAGGAGGTATCGTTGCGGTCATCACCAAGAAATTGTGGCAAGAGATCATCCGAGGCCTGGGACTACCTCCTTCTATAACGAGTGCCGCGTTCACGTTACGCACACAatacgtaaaatatttgtacgcGTACGAGTCACGAATGAACCAGTTCAGTACATTGGACGAGCTGAATATGGCGATAGCGGGCAACCGACGCGAGGGCCGGCGGAACAAGTCGCTCATGTACTCGGACATGCCGCCTCCGCCGCCCGGTCACCTACACCATCATCACCACAGTCATCACCAGCAAGTGCACGGTGGCCACCCACACTCGATGATGGGCGGAGGCGCTCCACCGCAGGCGTCGCCGcaacaacagcagcaacagcagcagcagcagcagcagcagcagcaacagcaacagccGCCTTCGTCCCATCACCATCACCACTACGCCAACGTGCTGGCCGCCGAAGATCGGTTCCGGCATCTCGCCGCCGCCATCATGGACAATCACCATCACGCGGCCGCTGCTGCAGCTGCCGCCGCGGCCGGCGTCAGTGTCGACCACCCCAGGCTGCGGATGCGATCGTGCAGTCCACCGCAACATCAGCAACAATTGCAATTGCAATCGGAATGCAAGACGTCCGCGGTCGCGTTGCACCAGACACCTCGGTCACCGGCCGCCGCCGGCttaccgccaccgccgccaaTGCCACCATCGTCGCTGTTCAATGGCCACCAGCCGCCGTCGTTCCAACATCTCCATcaacagcagcaacaacaaAATCAGTCCAACGCCACCCAGTCCAACAACGAGCAGACCAACAAGCAGAGAGAACTGCTCAGCATGCTCATGTGGATGGACATTGTCAGAGCGAATCAAACCGCAATCCCGAGACTACCCATTTCAAGTTTGCCATCCAGTCCGTCGGCtgctgcggcggcggcggcggcggccgcGTACACGGCGGCCGCGGCGCTGAACCTCACTCCCGCGTACAACAAGGGACAGCAGATGGCGGCCGTGGTCGTCGTGCCGGAACAGAGCGAAGCGCTGAACTTGGGCAAAAAGAGGACGTcgaacaacaacaacagcgaGGACGAGGACGCGGACGGCGACCGCGCGGACGAGTACGGCGGCTGCAGGCGCGAATCCGTGTCGTCCGCCGCGAAGCGCATCAAAACGGAACGGTCTTCGCCGCCGGTCAGCGGTTGTTCCAGCGACGACGAAAAGGCTGCGGCCAAGGCGACGAGCAACGGTAGCCCGTCGCCGCCGCAACCGTCGGCCGCCGACGACGTCGCGTACCGATCGGACAAGAGGCGCGGTCCGTCGCCGATCGACGAGGACGTGGTCGAGATGGACATCAACACGTCGCCTTCGGCCGGTTCTTCGGCTAACAACGGCTTGGCGATATCCGTGACGCGCAGAACGAAAAACGGCGTGTACATGGGTCAACTCACCAAGAACAATGCATTGATCAACGGAGGATGGAACAACAACGCAAATCCATTCGTTTTGCACCTAAACGGAGATCTATACACTGGGCAATTGCAGTTGCAACAAAAGCAGATGGCCAACAACTGA
- Protein Sequence
- MLNSEPSSELDKQQRNAQTEQVKMAATEAGSPRRLGLNLNLSVQPHATAYHWPHSTVAEDTSPSRSKGCTDEDDDDDEDDRDMDDRDMDDDEMMMDCRQDEDCSPEDEQDILEMQREERETLNQLARQLASGSRLITPMLQHLVYQHPGLSVQPSPMHQQQLQQQPSSVAVSLTTAALNRHATAAAADLSPKSSHSGDVPMSGGRSTEVQSPSAARNNEAQSWTFEEQFRQLYSAGSESDRRTFLDSLFSFMQEQGTPISRLPIMAKRVLDLYTLYKLVVQRGGIVAVITKKLWQEIIRGLGLPPSITSAAFTLRTQYVKYLYAYESRMNQFSTLDELNMAIAGNRREGRRNKSLMYSDMPPPPPGHLHHHHHSHHQQVHGGHPHSMMGGGAPPQASPQQQQQQQQQQQQQQQQQQPPSSHHHHHYANVLAAEDRFRHLAAAIMDNHHHAAAAAAAAAAGVSVDHPRLRMRSCSPPQHQQQLQLQSECKTSAVALHQTPRSPAAAGLPPPPPMPPSSLFNGHQPPSFQHLHQQQQQQNQSNATQSNNEQTNKQRELLSMLMWMDIVRANQTAIPRLPISSLPSSPSAAAAAAAAAAYTAAAALNLTPAYNKGQQMAAVVVVPEQSEALNLGKKRTSNNNNSEDEDADGDRADEYGGCRRESVSSAAKRIKTERSSPPVSGCSSDDEKAAAKATSNGSPSPPQPSAADDVAYRSDKRRGPSPIDEDVVEMDINTSPSAGSSANNGLAISVTRRTKNGVYMGQLTKNNALINGGWNNNANPFVLHLNGDLYTGQLQLQQKQMANN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00463138;
- 90% Identity
- iTF_01305325;
- 80% Identity
- -