Rmai004922.1
Basic Information
- Insect
- Rhopalosiphum maidis
- Gene Symbol
- cnc
- Assembly
- GCA_003676215.3
- Location
- NC:22213007-22300156[+]
Transcription Factor Domain
- TF Family
- TF_bZIP
- Domain
- bZIP domain
- PFAM
- AnimalTFDB
- TF Group
- Basic Domians group
- Description
- bZIP proteins are homo- or heterodimers that contain highly basic DNA binding regions adjacent to regions of α-helix that fold together as coiled coils
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-15 8.3e-13 47.5 6.3 3 61 806 864 804 868 0.92
Sequence Information
- Coding Sequence
- atgttgcGAATTAAAAAAGGATTTTCGGAGCAGTTGCTCCAGATGGCATTGCTGTTAAGTCTTATAGGCTACGATCGTCTGTGGCCAACATTTGGGATATGGCCTTCGGCACCTTCGGCCGAAATAGAAGTAGGGCCTTTGGATCAATGGGGCGACGACAGCTATTCAAATGGCTTTGGTCCACTAACGCAAATTCACCCCAAAAGTGTTGATCGATATTTGGATCGACAATGGCTGTTAAACGAATTGTTATCGTTGGGTAGATATGGCGATCGATATCCATCAAATATAGAGGCATATTTGCTTAATGTGGACGGCGACGAGAATGGCAGAGACGATCAGCAGCAGCAAGACTCGGGCGGTCAAGTTGTAAAAACTGAACCTAAAGAAAACGATAATGAAGACGATGATGTGGATAGAGTATTTGACACAGATATTGTTGAAGATGTTTTTATGCTTGCGCCAGAGgaCGCCGAGCTTGTGGAAGCCCTTTGGAAAGTTGATTTGGATTATGGATTGGCTGGCGCCACAACCGAGAGTCGCGGACCTTCTCCTTATAACGTTGGATCTTTCTTGTTACCGGGTGACGAACCGCCATCGCGCAATCACACTTTCAGCAGTCCCTCCGGTTCGTCCCATGGACGTTGGTACCTTCCACCACTGAATACAAACTCGAGTGACTTATCGCCAAGCTCCAGTTCATTTCCGagTCGATTTGAACGCACCCTAAATTCTGATGGAAATTCTTGGGAGGTCGGTAGTTTGTTGGTGGACCTCAGAACTACAGGCGAAAGTCGTTCGAGACGAGTGCCCAGTGATAATGATACCGAAACGTCGGATTTGGATGCCGATGAATCTACTGAACACAGAAATGACCGGTCAAGTAGTAACAATACATCTCCAAGCTTAACGCCAGGATTTCGTgtGAAAGAATCTCCGTGGTACGAACCATCGTTCGAGTTTGACTTTGATGAACTTGAATCTTTTGCAGACATGATGCAGTGTTATTCTCAACCACCGCCATCTTCCAGGCATTTCCaaGGCAGGATGGGCTACACAAGAACGGGCAACAGTGGAATGGACCAGCGGGGCTGGCAGGACTTGGCTACGTGCAGCCCGATGCTGGCGTTCCCGGTCGAAGGACAGCACCACCATCATCAGCCCCATTACGGCCAGCACCCGTCCAGCGCGCTCAGTTACCCGCCCGGGCCCGGCATGTATCACCATCCGCATCACCACCAACACCACCACCAGCACAACAATcacaacagcaacaacaacacGGGAAACGTGTTGTTGCAGAACGTGAGCCTGTGCGCGCCTCCTCCGCCACCACCTCCACCAGCGTCCACGTCCATTGACATGGGCGGAGGCCACGCGACCACGTCTTCGTCGTCGTCCCTATCACACTATCATCACCACTCTTCGTCGATCGGTGTGTCGACCAACTGCAATCTTAGTTCAGCCGTTGCCACTTCGCTTCACTTACCCGGCAGTTCATCCGAACAGCCTACAGCGTTCAAGACAGAACCCCATCAACATGAAATGATGTTTCCCTATCAGAATCACAATAATGAAATGGCTCCTTCATCGGATGGACTTTTGTCGTCGATATTAAACGACGACGACTTGCAGCTTATGGACCCATCGATGGGTGCGGACGgtgGCATGTACCCGGTGCGGATGATGGACACAGCTAGTAGCTCGGTGCCGTGCAACAACAACACGATGAACACCGCAACCATGGTACAAAACGGTAACGCGGGCGGTGGTGACTCGGACAGCGCCGTTAGTTCAATGGGCTCAGAACGCGTGCCCTCGTTGTCGTCAGACACCGAATGGATGGAAACCAACTCGGACAGTGGACATAATGAAGGGTACCCATCCCACTCCCACCAAGAATATGGAAAAATGAGGTGGTTAGACAATTATCTGTATTCCGGAAGTCGTGGTCATTCGGCTGCTCCACAAAAGAAATACCAGTTGTACGGAAGGCGTCTAACAGATCCTGTATCagGAACCCCGAACGCCACTGAAACGACAAGGCCGAATCACGTTGGTCTAGTGCCCGATTCATTGAACCTGCCGTATGATATGTCCGTCAGGGAAGGTATTCCAGTGCCTGGTTCTTCACAGTTTAACAGGCACATGGCtgGTTGTTCACGTGTGATGACGCCCGAACACCAAGTGGCTCTCAACCATACGTATGCACTACCTGCTGAAGGTCCCAGGACACCGCGTAACAAGTTCAAGAGCAGCAGTAAGAGGAGCGAGGATGAACAACTAACAAGAGACGAGAAGAGGGCCAGAAATCTGAATATTCCTATCAGCGTCGACGACATAATCAATCTTCCCATGGATGAATTTAACGAGAGGCTGTCCAAGTATGACCTATCTGAAAGTCAACTGACATTGATTAGAGATATTAGACGTCGAGGAAAAAACAAGgtGGCTGCTCAAAATTGCCGGAAACGTAAGCTGGATCAAATCCTCAGTTTAGCCGACGAAGTAAAACAAATGAAAGACCGAAAGTTCAATCTGTTACAAGAACGTGAATACTTAATGACCGAACGTATGAGAGTCAAAACCAAATATGATCTACTTTATAACCATATATTTGCAaGTTTAAGAGATCCTGACGGAAATCCGTACTCACCGTATACTCATACGCTGCGTGAGCAGCCAGACGGCAGTGTTAGTATTGTACCCAGAAATAATGGTACCCAAAGCGATCGGAATCCTCGGTCTAAGCAACACAAGGACAagtaa
- Protein Sequence
- MLRIKKGFSEQLLQMALLLSLIGYDRLWPTFGIWPSAPSAEIEVGPLDQWGDDSYSNGFGPLTQIHPKSVDRYLDRQWLLNELLSLGRYGDRYPSNIEAYLLNVDGDENGRDDQQQQDSGGQVVKTEPKENDNEDDDVDRVFDTDIVEDVFMLAPEDAELVEALWKVDLDYGLAGATTESRGPSPYNVGSFLLPGDEPPSRNHTFSSPSGSSHGRWYLPPLNTNSSDLSPSSSSFPSRFERTLNSDGNSWEVGSLLVDLRTTGESRSRRVPSDNDTETSDLDADESTEHRNDRSSSNNTSPSLTPGFRVKESPWYEPSFEFDFDELESFADMMQCYSQPPPSSRHFQGRMGYTRTGNSGMDQRGWQDLATCSPMLAFPVEGQHHHHQPHYGQHPSSALSYPPGPGMYHHPHHHQHHHQHNNHNSNNNTGNVLLQNVSLCAPPPPPPPPASTSIDMGGGHATTSSSSSLSHYHHHSSSIGVSTNCNLSSAVATSLHLPGSSSEQPTAFKTEPHQHEMMFPYQNHNNEMAPSSDGLLSSILNDDDLQLMDPSMGADGGMYPVRMMDTASSSVPCNNNTMNTATMVQNGNAGGGDSDSAVSSMGSERVPSLSSDTEWMETNSDSGHNEGYPSHSHQEYGKMRWLDNYLYSGSRGHSAAPQKKYQLYGRRLTDPVSGTPNATETTRPNHVGLVPDSLNLPYDMSVREGIPVPGSSQFNRHMAGCSRVMTPEHQVALNHTYALPAEGPRTPRNKFKSSSKRSEDEQLTRDEKRARNLNIPISVDDIINLPMDEFNERLSKYDLSESQLTLIRDIRRRGKNKVAAQNCRKRKLDQILSLADEVKQMKDRKFNLLQEREYLMTERMRVKTKYDLLYNHIFASLRDPDGNPYSPYTHTLREQPDGSVSIVPRNNGTQSDRNPRSKQHKDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00972796;
- 90% Identity
- iTF_01328352;
- 80% Identity
- -