Rmai004091.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhopalosiphum maidis
Gene Symbol
Rfx2
Assembly
GCA_003676215.3
Location
NC:6672900-6682780[+]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 4e-34 2.3e-30 104.4 0.1 3 78 260 335 258 336 0.97
2 2 1.8 1.1e+04 -3.5 0.0 12 36 475 495 471 516 0.68

Sequence Information

Coding Sequence
ATGGCGATTTCGGTAAAGAGTAGAATCAAATTAGAAGAATCAGCTGGAACTAGCTCTCAAATTAATGctataactgttttaaaaactgGTGAGGTTGGTCAAACTCATATCGTACAACCAGTACAACAAACTTCTGTGAATATCAATAGTAATAGACAACTTGCAAATGCTTTACCATATGGAATTAATCcagttcataaaaatgttcctaataaattaatggatGATGATAAACATCGCCTAGatcataaaaatagaaattcttCTACAGTTGCTGTCAATAATGATCATTATGTTGTAACAGCATTAGTTCCCAAAATAGAGCCTATTGATTCTTATGACATTGATTCTACTTATGTACAGTATGTTGAAGAAACTGATAAAcagacaattttcaaaaatgaacaaaatatgacGTACCCAATTTATACTGTGAATGAGAGTGGAACAATGTATCAAGCTGGTCAGACCCATTACGCTCCAAGTACAAATTCGTATTCACaaattataaacacTTTAGGCCAACCGACATGTCATGcccaaattataagtaatggAACCTATATTGTACAACAGAATGTTGACAattatcatactattatttcTACTTCTCAAAGAGACAGCCCAAATTCTACTATATCTTcggaTATGTCATATCATACAGTAAGCACTATTGACTCTGACATAacaaacacaaatataaatcaattgaatGATATCAAGTTAAATACAGTAATGCAAAACTCCAGTCTTATGCgcacaaataaaatttctcCTGTAATTATCAACTGGCTGAtggaaaattatgaaatggCTGAAGGAGTGTCATTACTTCGatcaacaatatataatcattatttaacacaTTGCTCGAAAACTAAAATCGATCCTGTAATTGGACCATCATTTGGTAAAATTATCCGATCTGTGTTTACAGGATTACGTACTAGACGTCTTGGAACTCGaggaAATtccaaatatcattattatggtattagaATTAAAGCtagttcattattaaatgactTTAAAGAAGAAGAAAACCTATCAAATCAAACAAACCAAAATAgtagttcaaaaaatattaaattgattaacatGGAAGAAGAAAATTGCAATCAATACACCAATAACAATTCAGATTCTACTAATTGTTCTCAAAACTTTATTCCATCTTCTCCTCAAGCACAAGATCAAGAATATTTAGGCGATGGTACTAATGTTGTACCAGAATTTcctgatattatattgaatgaaCTAGAATTGGATGATAATTGTACTTTAGATGATGTAGATACATTCAAAAATTTGTATCGTGAACATTATGAAGCATTTTTAGGTGCTATAttgaatttagaatttaacaCTGTTGAGTCACTCTGGCGTCAATTTTGGTGTAgtcaagataataataacgataaatgtgaagaaaaaaaatgtttatctaaaaaaaagttatatgcaTTGTCCAAGTGTAAAACATTGCAATTATTTGTGAAAACTGCTGACtttctattttatcaaaacttagtaaaagttttaattccAGATGTTCTTCGAACTGTTCCtagaACATTAACACAAGCCATTAGACATTTTTCTAAAGGTGTAGAGTCATGGCTTATTTCGGCAATGCAGGGATGCCCAGAAGAAATGATctcaataaaagtgACTGGTGTTAGAACCTTTGCACAAACATTGCGTAGATATACTACTGCAAGAGCTGTGCTTCAAAATTATACCCAAATAAATCAAATGCTTACTGATTTGAATCATGTGGACTTCCGTAATATACAAGAACAAgTTCAACTAATAAGTACTTTGGGAAGTGAAAATGATTCAGTTTATACAAAGAAGAgagtttatagtaaaataaatgaatgctCTGAAATGATTTCGGATTTTAATGAACTctctaaaaaaacaaaaactcacAACTatTCGGCCACTACTTCTACAGATACAGAATGTTTTAATGTCTTAGTAAAAAATCCATCTAAAGAAACCAACAACAAGATATCTAAGatggaaATAAAAGAAGAAATACAGTCGAAAGATGAATTtgaacaaaaacataatttaaaaatagagtaCTTGAAAGAAGATATATTTGAAGATTATACACAAGAGATATACAATGatactGCTATGATTAACTCTTCTTACAATCCAAGTATTTCAGAAGTCCATGAAGAATACTCTAAATTatctcataaattatcaacaaaacaaaagaatgaacagaaaataataattaagGCGGAAATAATGTCACCGACCTACTCAAATAAACGTAAACGACAGACAACTGATAAAGAATATTCAAAAAACGATTTTCCTCGATCAGAGGACTCGGGCGAGGAGGCATGTGGATATGATAGTAATAATCGTTTTGGTGATTACAATGaagataattttgaatttttcgcTGCTCAAGACGATTACAAGTCGGAATATCCCACTATGGATGACACAGGTCTGTTTTCTTGTCAGTATTGTGACAAAGAATTTAGCAATGCCAATAGCTTATCCAGACACGAAAATGTTCACACTGGAAAAACTCCTATCGAGTGTGACGTCtgctttaaaacatttatcagCAAAtcaatattgtgtatacataaaagATCGCATACTGGAGAGAAACCATATGCCTGCAACGTTTGTGGACGATCGTTTACACAAAAGTCACATTTGGTTTTACATCATAGAACACACACAGGCGAAAAACCATACAAGTGCGGCCTGTGTGAAAAAAAGTTCTCATCAACCAGTGGTCGAGCAGAACATACGCGTAGACGTCACCCTTACGTTTGA
Protein Sequence
MAISVKSRIKLEESAGTSSQINAITVLKTGEVGQTHIVQPVQQTSVNINSNRQLANALPYGINPVHKNVPNKLMDDDKHRLDHKNRNSSTVAVNNDHYVVTALVPKIEPIDSYDIDSTYVQYVEETDKQTIFKNEQNMTYPIYTVNESGTMYQAGQTHYAPSTNSYSQIINTLGQPTCHAQIISNGTYIVQQNVDNYHTIISTSQRDSPNSTISSDMSYHTVSTIDSDITNTNINQLNDIKLNTVMQNSSLMRTNKISPVIINWLMENYEMAEGVSLLRSTIYNHYLTHCSKTKIDPVIGPSFGKIIRSVFTGLRTRRLGTRGNSKYHYYGIRIKASSLLNDFKEEENLSNQTNQNSSSKNIKLINMEEENCNQYTNNNSDSTNCSQNFIPSSPQAQDQEYLGDGTNVVPEFPDIILNELELDDNCTLDDVDTFKNLYREHYEAFLGAILNLEFNTVESLWRQFWCSQDNNNDKCEEKKCLSKKKLYALSKCKTLQLFVKTADFLFYQNLVKVLIPDVLRTVPRTLTQAIRHFSKGVESWLISAMQGCPEEMISIKVTGVRTFAQTLRRYTTARAVLQNYTQINQMLTDLNHVDFRNIQEQVQLISTLGSENDSVYTKKRVYSKINECSEMISDFNELSKKTKTHNYSATTSTDTECFNVLVKNPSKETNNKISKMEIKEEIQSKDEFEQKHNLKIEYLKEDIFEDYTQEIYNDTAMINSSYNPSISEVHEEYSKLSHKLSTKQKNEQKIIIKAEIMSPTYSNKRKRQTTDKEYSKNDFPRSEDSGEEACGYDSNNRFGDYNEDNFEFFAAQDDYKSEYPTMDDTGLFSCQYCDKEFSNANSLSRHENVHTGKTPIECDVCFKTFISKSILCIHKRSHTGEKPYACNVCGRSFTQKSHLVLHHRTHTGEKPYKCGLCEKKFSSTSGRAEHTRRRHPYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01305120;
90% Identity
iTF_01304448;
80% Identity
iTF_01304448;