Basic Information

Insect: Rhogogaster chlorosoma
Gene Symbol: RREB1
Assembly: GCA_944452905.1
Location: CALYCC010000070.1:1075133-1081615[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.082 13 7.5 0.0 2 23 50 71 49 71 0.95

2 14 3e-05 0.0045 18.3 0.5 2 23 87 108 86 108 0.96

3 14 1.1e-06 0.00017 22.8 1.3 1 23 114 137 114 137 0.98

4 14 0.15 23 6.6 4.5 2 23 250 272 250 273 0.96

5 14 0.063 9.7 7.8 0.1 1 23 462 484 462 484 0.96

6 14 3.2e-05 0.0049 18.2 0.3 1 23 493 515 493 515 0.98

7 14 0.00072 0.11 13.9 3.1 1 23 521 544 521 544 0.97

8 14 0.0019 0.3 12.6 2.8 1 23 930 953 930 953 0.96

9 14 0.00029 0.045 15.2 1.4 2 23 1236 1257 1235 1257 0.97

10 14 0.022 3.4 9.3 4.5 1 23 1263 1286 1263 1286 0.97

11 14 0.004 0.62 11.6 1.5 1 23 1325 1349 1325 1349 0.96

12 14 4.7 7.2e+02 1.9 4.4 1 23 1438 1461 1438 1461 0.91

13 14 0.011 1.6 10.3 0.4 2 23 1514 1535 1513 1535 0.94

14 14 0.008 1.2 10.6 7.9 1 23 1541 1563 1541 1563 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.082	13	7.5	0.0	2	23	50	71	49	71	0.95
2	14	3e-05	0.0045	18.3	0.5	2	23	87	108	86	108	0.96
3	14	1.1e-06	0.00017	22.8	1.3	1	23	114	137	114	137	0.98
4	14	0.15	23	6.6	4.5	2	23	250	272	250	273	0.96
5	14	0.063	9.7	7.8	0.1	1	23	462	484	462	484	0.96
6	14	3.2e-05	0.0049	18.2	0.3	1	23	493	515	493	515	0.98
7	14	0.00072	0.11	13.9	3.1	1	23	521	544	521	544	0.97
8	14	0.0019	0.3	12.6	2.8	1	23	930	953	930	953	0.96
9	14	0.00029	0.045	15.2	1.4	2	23	1236	1257	1235	1257	0.97
10	14	0.022	3.4	9.3	4.5	1	23	1263	1286	1263	1286	0.97
11	14	0.004	0.62	11.6	1.5	1	23	1325	1349	1325	1349	0.96
12	14	4.7	7.2e+02	1.9	4.4	1	23	1438	1461	1438	1461	0.91
13	14	0.011	1.6	10.3	0.4	2	23	1514	1535	1513	1535	0.94
14	14	0.008	1.2	10.6	7.9	1	23	1541	1563	1541	1563	0.98

Sequence Information

Coding Sequence: ATGGCCTGTCTCGCAGGTGCGATCGCCCCTGTGCCAGTCGCCCCACGTTCAGTTACCACAGACAGCGGACTGGAGAAACGTCAGAATAGTGAGACGCAAACGGACACAGATACGTCAGCTTCGGTCGACCAATCCCGCTCAGCCCTCGTTTGTCCGGCTTGCTCATTAGTACTACCGAATACTCGTGAATTGACAAATCACATACGAGATCACAACTCGCCTCGTAGCAGCGACGGAAGTGCGGCCGAGGACGAGTGTTCCTGTAAAGTTTGCGGCAAGGTCCTTAGCTCGGCTAGTTCCTTGGACCGCCATATCCTGGTCCACTCGGGAGAGCGACCCTTCAAGTGCAGAATCTGCGGACTCGCTTTTACAACAAACGGAAATATGCACCGCCACATAAGGACTGCCCACGGTGGCAGCCCGCCGAACAGTTGTACGGATTCGGACGGTAGTAGCGACTTGGAAATGCCAATAACCAAGCGGAGAAGAATAGAGGAGTTCAACAACAATAATAACAACAACAATAACGTTTCAAAGAGAAAATCACCCGAGTGCGTTGAGGAGATTGATCAAGGAGGACGAAAGCACAAGAGTCTTTTGAACAACAACTCGCGATCGGAGGCAAAGAATGATCAGGTCCAGACGCGGAAGACCCACAACTACCCCGTTATATGCGAGAGACAGAATTTTGAGACGAACGCCCTTCCCGAGGAACACCTCGAACGCACTCAGCCGACACATCCAGCAAAATGTGACACCTGCAACCTCAACTTCAAGGACGAGCGAGTGCTCAAACATCATCGTTCGATGGGACATCATTCCGACCGTTCGATCGACAGCCCGACGAGAAACCTTCGAAACTCGGTTGTTGGCTTTGACGATTTGACTTTTGTCGATTTTTCGTCCGGTAAATTTCCAACGATTGCCCGTGCCGTTTGCGAAAAATCACTTCACCGACCTGCGTCTGGAGAAGTTGCTAGATTCCAGTGTTGCAAGTGCCTCAGAGCCTTCCCGTGCAGGACTGCGCTAGACTCGCATGAAACTGACTGCGGGAATCAGAGCTCGCAGCCGAGGAGCATCACCGACGACCAATCCAAAAGGAATGACTTCTTCGCGGGACTAGATCTACAAAATAAGGCCGCTATCGCTGAAGCGAAGGAAGGAAAAGACTTGGCCGACATTCAGAGTATCATTTCGTTGACCTCTGGGCCAATATTGCAAAATTTTTCGAGATCTGACGCCAGCACTCCAGACAACGTTATAAAGATCGGGTCAAGCATCGGCTCTTCCGGTTCTTCCGGAACCACGTCTGCCGAGAACCACGAAGAGGAGGTGCAGGATGCGTTTTCAGCCGAGTTTCGTAGGATGAAACTTCGCGGTGAATTTCCTTGCCGACTTTGCACCGCTGTTTTTCCAAATCTACGTGCTCTGAAGGGGCACAATCGGGCACACATGGGCGTGAGTCCGGGAACACCGTACCCCTGCAATATGTGCCCATACACAAGCACTGACAAAACCGCGCTGGTCAGGCACCTCCGATCTCACAACGGCGATCGTCCTTACGAATGCTCATTGTGCAATTACGCATTCACCACGAAAGCCAACTGCGAACGTCACCTTCGGAATCGCCACGCCAAACTGACCCGCGAGGACGTTAAGCGATCTATCATCTATCATTCCAGCGAAGACCCGCTTTATGATCACGGGGAAGCTCCACCGCGAGGGGTGCGAGATGATACACGTAGAATCCTCGTCTACCCAACGGAACGGGAAGATAGTAATCAGCAAAGGGCCAGTACCGGGTCTGACACGAAGTCCGAGATCAGGGTAATCGATGAGGCGAAACTTTTGCAACCTGATATTACTGCGCGAAACGCTCCGCTGTTGGGTCACTTTGATACGACGGAGATCTTTCACAAAACGCCACCGACTCAACCGCTCGAAATGCTCCCGAGGCACACCGAGAGTCTCATGGAAATTGAAAAACCGCAGGATTTGGTAGCCAAGCAATCCTTCACCAAGGATACCGTCGACCAGGATGACAACTCCTCGGACGAAAGCGTATCACCTCTAGTCACCGAAGCCAAAGCAGCAATGCACCAAAGACTACTGGATGTTAGAATGGACCATGAGACAGCTGGTGGTCCCGATAGCTACGGTGAAGACGCGCCCTTGGACTTGTCCATGGACGCTTTAGACCTGAGTAAAAAGTCCAAGGTTGCGGAAACCGAAGCGGTCATCGCACCCGAAGAAGCTCACAGGCGCGAGAAAGATTTTTACAATGTAACGAATCATCTGCTCCTGACACAAGCCCTACTTAAGAGTGGTCAAAACTCGCAATCGCCCTCTTTGCAGGAGGCACTGCAGTACGCCAATGCCCACCTACTCTGCCGCAACTTCGGAACATTCCCGCCTGTAATTGGGGCCGGACTGATGTCGTCCTATTTTATAAACCCGAACTTGTTTAGTCAAGACTTCAACATGAAGAGCAGATTGCAGAAAGACTTGTTCAAAGGTCTGCAGTGCAGTGGTGGTGGCATGGTTGAACCCCAAATTTCCAGGGGCGAGTTTGGAACACCATTTTCTCAAAACAGAGACGCGTCATGCCATTCGGCGAGTGAAGACGCGGACTATTCCCCGAAGCTAATGTCCCCGAAGTTATCGAGCAAAGTAGCCTCCCGTGAAAAGCTTGAAAATTCACCCCCGCCAAATTCCGTGAAGATGGTCATCAAGAACGGAGTTCTAATGCCGAAGCAAAAACAACGAAGATATAGAACGGAGCGACCATTTTCCTGCGAACATTGCTCGGCAAGGTTCACCCTAAGAAGCAACATGGAAAGGCATGTGAAACAACAACATCCAGGACACTGGAGCCAAAGACAACGCGGTGGACACTCGACCAGAGGAAGACCTCCCACGAATCCACCAACGTTACTGCAGAGCTTGCGACAACCCGCGTCACAATCGATTCCACAACACTATTCGAACATTCTACCCAAAATTGACCATTCCAGTTCGGTTCAGAATTATGGCAAACACGCCATCCCGGATCACGTCAAGTACGCGATTTTGGCCCAGCAATTGAAGGGCAATAATAAAGCAGAAGAGAATGACTCTGAAGAGGAGTTAGTCATCGATGAGGAACCCACAGAAGATGAAGCATCGGAATCTCGGGCACAGCATGACGAGCGGCAACCATCCAGTCTGCTGAGAGGGAAGCTTGAAGATCGGAGTGATTTTAGCAAAGATAACATCATGAACCAACACGTCAACGATTTTTCTAAAGAGTATCTGGTGCAGCTACGGCAGCAACATATCGCAACAATGAAACAGTACGAGAACTCAAAATTGTACAAGGCTAAAGCGGACGACAATTCCGAAAAAGATGTCAATGATGAACTGGAGGAAGAAGCTGCGGAGGAGCAAAAGAAATCGGATACCGAGGAACACGCAGAAACTGAAGAAGAAAGAGAGAAAACTGAGGACGGTGCTGTCGATCTTGCGAGTGTCTCTAGGCTGCTCGACAACGCCTCACAACAGTACCAACAATTTCAACCTCAGTATCTCAGCGACGAGGAGGAGGGGCTAGTCGCCTCAACTAGCGAAGGAAATAACTCCGGAAGTGATGAGAAGTCAGACTCCGGTAATTCCGAGTCTGTTCCAGGCAAGAAAAAGTCCGCTTACTCGTTGGCACCGAATAGAGTCTCGTGTCCATACTGTCACAGAAAATTCCCATGGACGTCTTCGCTGAGGAGACACATCTTGACTCATACCGGTCAAAAACCTTACAAATGCACTTACTGCCCGCTGCTTTTCACAACAAAGTCAAACTGCGATCGCCATTTATTGCGAAAACACGTGAACGGCGCCACTGGCCAGCCTCAATCATCCGCTGCATCATCATCGCCTGAGACCTCGACCGCTTTGGTCAACAGCAATGCATTTGCGATGAGAAACGTTCCGGAAAGACCTTACAAGTGCAACCAGTGTCCAAGCTCGACATTTTCGACCTTGGGGAACCTGAAGAAGCATCTCTCTTCGAAACATACGAGTGGAGGACTGAACTCCAGATCGCACAGTCCGCTCAGCGATCTCCAAAGCAGTCCCAACGAATCTTTGAAACAAAATGATCAGAGTGACTACGAAAGTCCTTCATCAAGCATCGAAGAACCCGCTCGTATCTCGCCAAGCATTACCGACGATAACCACAAGGCCACACCCAACACCTCGACCAGCATCGATACACCGCAATCTCTGAAGACCTCCCCGGAGTCCGGATCCACCGTGTCTTCATGCTCCTCCGAGTTACCTTTCAAATGTCACCTTTGCGATGGCAGTTTCGCCGAAAGACAGGACTGCCTTGAACACATCAAACACGATCACAGATCAGAGTACAAACTCTTGCTGACAAAAGGCGCCTTGGACATGGCTGCTGAGACAGAGACCCACCCCGAAGAGCAACAACAACCACCGCAACAACACTGCGACGATGGAGAAGGTCAGCGTGGCAAGTTCCCCGATTACGCTAACAGAAAGGTAGTgtgcgcgttctgtatgcgtcgattttggtcagccgaagaccttcggcgacacatgcgaacgcatacgggcgagagaccgttctcctgtgatatttgccatcggaagtttaccctgaagcacagcatgcTACGACATCGTAAAAAACATGGTTCCATCCGTTCATCGATTTACACTGGGACTAGCGGGGACGAGGAAGCCTCTCCGACGACCGGTATAAACAACAATAACACCAATAATAACAACAACAATACCGTTAAGGCTCAAGAGATGGGAAACCGCCCTAGTACGGCACCGGGCGAAGGAACTCCCGTGAGATTTGGAGCGCATGACAAACTTGCCAGTCTTTCTGGCAAGCTTGCGAACCTTCAGAATAACAACAATAACGTCGAGGATGAGGGAGACATCGATTTGATCTCAAATCTTTTAGAGATTAGAGACAGAACCTTTATCGATAGGATTCTGCAAGCGTCACCTGACGACGCGGCCAAACTACTTGGCGTTCAAAGAGGCAACGAATAG
Protein Sequence: MACLAGAIAPVPVAPRSVTTDSGLEKRQNSETQTDTDTSASVDQSRSALVCPACSLVLPNTRELTNHIRDHNSPRSSDGSAAEDECSCKVCGKVLSSASSLDRHILVHSGERPFKCRICGLAFTTNGNMHRHIRTAHGGSPPNSCTDSDGSSDLEMPITKRRRIEEFNNNNNNNNNVSKRKSPECVEEIDQGGRKHKSLLNNNSRSEAKNDQVQTRKTHNYPVICERQNFETNALPEEHLERTQPTHPAKCDTCNLNFKDERVLKHHRSMGHHSDRSIDSPTRNLRNSVVGFDDLTFVDFSSGKFPTIARAVCEKSLHRPASGEVARFQCCKCLRAFPCRTALDSHETDCGNQSSQPRSITDDQSKRNDFFAGLDLQNKAAIAEAKEGKDLADIQSIISLTSGPILQNFSRSDASTPDNVIKIGSSIGSSGSSGTTSAENHEEEVQDAFSAEFRRMKLRGEFPCRLCTAVFPNLRALKGHNRAHMGVSPGTPYPCNMCPYTSTDKTALVRHLRSHNGDRPYECSLCNYAFTTKANCERHLRNRHAKLTREDVKRSIIYHSSEDPLYDHGEAPPRGVRDDTRRILVYPTEREDSNQQRASTGSDTKSEIRVIDEAKLLQPDITARNAPLLGHFDTTEIFHKTPPTQPLEMLPRHTESLMEIEKPQDLVAKQSFTKDTVDQDDNSSDESVSPLVTEAKAAMHQRLLDVRMDHETAGGPDSYGEDAPLDLSMDALDLSKKSKVAETEAVIAPEEAHRREKDFYNVTNHLLLTQALLKSGQNSQSPSLQEALQYANAHLLCRNFGTFPPVIGAGLMSSYFINPNLFSQDFNMKSRLQKDLFKGLQCSGGGMVEPQISRGEFGTPFSQNRDASCHSASEDADYSPKLMSPKLSSKVASREKLENSPPPNSVKMVIKNGVLMPKQKQRRYRTERPFSCEHCSARFTLRSNMERHVKQQHPGHWSQRQRGGHSTRGRPPTNPPTLLQSLRQPASQSIPQHYSNILPKIDHSSSVQNYGKHAIPDHVKYAILAQQLKGNNKAEENDSEEELVIDEEPTEDEASESRAQHDERQPSSLLRGKLEDRSDFSKDNIMNQHVNDFSKEYLVQLRQQHIATMKQYENSKLYKAKADDNSEKDVNDELEEEAAEEQKKSDTEEHAETEEEREKTEDGAVDLASVSRLLDNASQQYQQFQPQYLSDEEEGLVASTSEGNNSGSDEKSDSGNSESVPGKKKSAYSLAPNRVSCPYCHRKFPWTSSLRRHILTHTGQKPYKCTYCPLLFTTKSNCDRHLLRKHVNGATGQPQSSAASSSPETSTALVNSNAFAMRNVPERPYKCNQCPSSTFSTLGNLKKHLSSKHTSGGLNSRSHSPLSDLQSSPNESLKQNDQSDYESPSSSIEEPARISPSITDDNHKATPNTSTSIDTPQSLKTSPESGSTVSSCSSELPFKCHLCDGSFAERQDCLEHIKHDHRSEYKLLLTKGALDMAAETETHPEEQQQPPQQHCDDGEGQRGKFPDYANRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICHRKFTLKHSMLRHRKKHGSIRSSIYTGTSGDEEASPTTGINNNNTNNNNNNTVKAQEMGNRPSTAPGEGTPVRFGAHDKLASLSGKLANLQNNNNNVEDEGDIDLISNLLEIRDRTFIDRILQASPDDAAKLLGVQRGNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00939029;
90% Identity: iTF_01411826;
80% Identity: -