Basic Information

Insect: Rhogogaster chlorosoma
Gene Symbol: -
Assembly: GCA_944452905.1
Location: CALYCC010000010.1:596215-600019[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 1.9 2.9e+02 3.2 0.6 1 20 394 413 394 416 0.78

2 20 5.3e-05 0.0081 17.5 0.9 2 23 426 447 425 447 0.97

3 20 0.82 1.3e+02 4.3 0.3 2 23 477 498 476 498 0.83

4 20 0.013 1.9 10.0 0.9 1 23 506 529 506 529 0.92

5 20 5.9e-05 0.0091 17.3 0.8 1 23 535 559 535 559 0.92

6 20 0.7 1.1e+02 4.5 0.1 2 23 593 614 592 614 0.91

7 20 0.15 23 6.6 0.7 2 23 623 645 622 645 0.93

8 20 0.00078 0.12 13.8 2.2 1 22 651 672 651 675 0.90

9 20 0.00026 0.04 15.3 6.5 1 23 759 781 759 781 0.98

10 20 0.0049 0.76 11.3 0.3 1 23 788 811 788 811 0.92

11 20 8.4e-05 0.013 16.9 2.1 1 23 817 839 817 839 0.98

12 20 0.00058 0.089 14.2 2.1 1 23 845 867 845 867 0.97

13 20 1.8e-05 0.0027 19.0 0.8 1 23 873 895 873 895 0.97

14 20 0.052 8 8.1 0.6 1 23 908 931 908 931 0.96

15 20 0.00011 0.016 16.5 3.7 1 23 947 970 947 970 0.96

16 20 0.0051 0.79 11.2 1.6 1 23 978 1001 978 1001 0.96

17 20 4.8e-05 0.0074 17.6 1.6 1 23 1007 1029 1007 1029 0.98

18 20 0.015 2.4 9.7 7.2 1 23 1035 1057 1035 1057 0.98

19 20 0.00022 0.033 15.6 1.5 1 23 1063 1086 1063 1086 0.98

20 20 0.0016 0.24 12.9 3.5 1 23 1092 1114 1092 1114 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	1.9	2.9e+02	3.2	0.6	1	20	394	413	394	416	0.78
2	20	5.3e-05	0.0081	17.5	0.9	2	23	426	447	425	447	0.97
3	20	0.82	1.3e+02	4.3	0.3	2	23	477	498	476	498	0.83
4	20	0.013	1.9	10.0	0.9	1	23	506	529	506	529	0.92
5	20	5.9e-05	0.0091	17.3	0.8	1	23	535	559	535	559	0.92
6	20	0.7	1.1e+02	4.5	0.1	2	23	593	614	592	614	0.91
7	20	0.15	23	6.6	0.7	2	23	623	645	622	645	0.93
8	20	0.00078	0.12	13.8	2.2	1	22	651	672	651	675	0.90
9	20	0.00026	0.04	15.3	6.5	1	23	759	781	759	781	0.98
10	20	0.0049	0.76	11.3	0.3	1	23	788	811	788	811	0.92
11	20	8.4e-05	0.013	16.9	2.1	1	23	817	839	817	839	0.98
12	20	0.00058	0.089	14.2	2.1	1	23	845	867	845	867	0.97
13	20	1.8e-05	0.0027	19.0	0.8	1	23	873	895	873	895	0.97
14	20	0.052	8	8.1	0.6	1	23	908	931	908	931	0.96
15	20	0.00011	0.016	16.5	3.7	1	23	947	970	947	970	0.96
16	20	0.0051	0.79	11.2	1.6	1	23	978	1001	978	1001	0.96
17	20	4.8e-05	0.0074	17.6	1.6	1	23	1007	1029	1007	1029	0.98
18	20	0.015	2.4	9.7	7.2	1	23	1035	1057	1035	1057	0.98
19	20	0.00022	0.033	15.6	1.5	1	23	1063	1086	1063	1086	0.98
20	20	0.0016	0.24	12.9	3.5	1	23	1092	1114	1092	1114	0.97

Sequence Information

Coding Sequence: ATGAAGACGTTTACGATAAAAATAACCGACGCGGTCAACGTCGCACTTACAATGACAGAAACTTTTAAAGATCTTAAAGAAAAATTGAATAACGTTAGTCTGGAATTCGATATAAATTCTGTGCAGATCAAGGGGAAACCGTTAACCGAGGATCTAGTTGTCGCTGAGTATCTCAACATCGATGATAAAGAAGCCGACGATGAGGTTGCGGAATTCGTATTGCCAGATTTGCCAGAATCAGAGACACCGATTTGCAAAGATTTGAATGAAGAAACTTTGGGCAATGAATTGCTCTGCCGTTTGTGCGGAATCAAGACTGAGGATCCTGTGAGGATTTTCAACGAAACTGAAGACATTAGTCTTAAAATTAACAACTTTATCCCGGTGTCTATTTCGAGGGAGGACCAGCTATCCAAGTACATTTGCACGGCTTGCGTTGAGAAACTGGAAATGATAAACGAGTTTATCAGAATCTGTAAGGAAACTGACGAGAAGTTATCCAGCATCAGAAAATCTATGGGAATTTCACCTGGGAATATGAAAACTGCTGGGGAGGCGGAAAGATCTTTAACAGAAGCGGGAAGTTTCGTACTCGAGGATAAAGCGGCGATATACAAATGTCCAAACTGTAAAATTGATCTGAGGATTACCAGAGCTGAAGAATCTCAGAATAATCAAATCAAGTCGCGGATTTCTTCGGTTAAAAGAGTCGGGAAAAAATCTCACAATCTACGGAGTTCAAATACTAATAGGAGGATCGGTACTAGACTAGGAAAGATATCCAGGAAATCTACAAACGAAGTTGCCGAAGATAATCTGATCAGCAATGAGGAGGAGGAACAGATCAAAAAGACTTCAGATATTTCGAAAACGTCTACATTAACTGGCGACCTAATTCACAGCGAGATTACGGAGGATAGTTTATCTTTAAATAATGGGAATTCTGGCGAGAAGGGAAAAATGAAGCTCAGAGACATTCGGAAAAGGATGCTAGTCGGCGACGCTGCGACTGAGAGTATTTCAGATGTAGTTAAAACGAGGAAACTGGAGTCAGACGCTTTGGAAGATGCTTTGTTTTCCATGAACTCTGACCTCCAAGTATCAGGTATAACTGGAGAATTCGTTGAGCTCGATGCGTTGGAGGGAAATAGTAACGAGAGCATGAAAAAGGGGACTAAATACAAGTGCGAATTGTGCGAAGCTGAGTTCTATTCGCAGGAGAGATACTTGTTTCATGTGGAAAGGCACGATTCTGAAAATTTCGACGAATTTATAAGGTGCAGCCTTTGCAAGAAGGATTTTTCGACTGAGGATCAGCTTTGGGAACATCGGAGATATCATATTGCGGATGATCCGGAGGTTGGGGAAGCCTCACCTTCAAATATAGACGTTCTGCAATCAGAGCGTACCCGAAAATCCAGCAAATCAACTTGCGACGATTGCGGAGCCCGGTTTGTACTTAGAGAGCGATACGAGTTTCACATTGAGAGACACAAGTTTGGCAATATAAAACAGTTCTCTTGCATGATTTGCGACAAGAGATTCAAGAGCGAAAATATACTCTGGGATCATTACCAGTATCAGCATAAGTCCGGGGAACGTTTTGCCTGTGTTACATGCGACAAGACTTTCGTCAAGCGAGCCAATTTGAATTATCATTTAAAAACGTTCGGGCATAAAGGGGGAAGAGTTGTGGCCAGCCCGGATCAAATTCCGCAAAACGAGGCGGATAACGGCGTGAAATTGTCGGACGTCGGTAAACCTAGACCCAAGATAACTTGCGCCGATTGCGGAGCCCGTTTCGTCCTTCAAGAACGTTACGAATTCCATATGGAGAGACACAAGTCGGGGAGAATGGACACTTGCGTTTGTACTTTGTGTGGGAGAGAGTCGACAAACGAGAACGTACTTTGGGACCATTATCAGTACATGCATAAGAGGACAAAGCGATACGCTTGCACAACTTGCGGTAAACTTTTTCACAAACAGTCGATGCTGAGCAGACATCAAATAAAATATGGGCACAAAGGAACGAGGGAAATAGACGTGGATACAGACGGGAATAGCGTGGCAGTGGACAGCGCTGCTTTCAAGAAAGTAATCGCCGAGGAAGTTGTGGAAATGAAATCCGTGAATTGCGTATTATGCGGAGAAGTCGTCTGGGGCGTTGATCCAAACTTGATAAACGATGCTGTGACTTGCGCGAGCTGCGAAGGACCCGGATTATCTTTGCAAGTCGATTCTGACGGGGCTAAGGTCATATCCCGCAGGCAGTATCATTGCAACATGTGCAATAAGCACTTCACCACTAAAGATAGACTGGAGTATCACATAATGAGGCATTCGGAAAATATGGAGGAGTTTGTGTGCAGTACTTGCGGAAAGGAATTGAGCACTGAACAAGCCCTGTTTGAGCATTACCTCTTCGTTCATAAAggagctaggccccacgtatgcgaattgtgtggaaagtcttaccagtttaaagccagactgaaagagcacatgagaagccacagcggggagagaccattcgcctgtgaaatatgcgggcaaagatgcatgaccaacaacgctttgaggtctcataagaagacgcatatcacggagaaacggtttccctgccaaatatgcaagaaggctttcagaaagaggcaggatttgaacgagcatttggaaaggcattggaaaaaCGACAAGACTATGATGTTCCCGCAGGTATTTAGCTGCGCGGTTTGCATGGAGATGTTTCCCACCTTTAGAGTCCTCAAGAAACACATGAAGGAGACTCATAGCGTGGAAAGCCAGGACCCTATATTAACGGATCTGCAGCCTTGGTTCGAGTGTGAAGACTGCCATGAAAAATTCAAGCATCAAATGTCTCTGAAGGTCCACAGGGAGCGGGCGCATGAGGGAAAAATGAGGCCCGTGTACCACTGCGACGTTTGCAATGTAACTTACAAGAATGCTAGAGTACTTTCGAATCATATTAAAAATAAACACGAGGGAGGAAAACGGTACAAGTGTGCTCAATGCGGTAAAGAATACAACCAGTCGACGTCCCTCCACAATCATATCCTCCTTcataccggcgagaaaccgttcagctgtgaacattgcgaaatgacgtttagaactaaggaatctcgagaccatcatcggagaaaacacaccggcgaaagaccctacaaatgcccgcgatgcgataaagcttttgcTACTACTACGCAACGCCGTGAACATCGGAAACGGGTACATGATGAAGGGAATACACACAGCTGCCCTGAGTGTGGAAAAGTTTGCTTCGACGAACACGGGGTCAGGAGCCATTTGAACACGCATTTTAGCGATAGATTTAAAAACATACAAGAAAACCAGACTTGA
Protein Sequence: MKTFTIKITDAVNVALTMTETFKDLKEKLNNVSLEFDINSVQIKGKPLTEDLVVAEYLNIDDKEADDEVAEFVLPDLPESETPICKDLNEETLGNELLCRLCGIKTEDPVRIFNETEDISLKINNFIPVSISREDQLSKYICTACVEKLEMINEFIRICKETDEKLSSIRKSMGISPGNMKTAGEAERSLTEAGSFVLEDKAAIYKCPNCKIDLRITRAEESQNNQIKSRISSVKRVGKKSHNLRSSNTNRRIGTRLGKISRKSTNEVAEDNLISNEEEEQIKKTSDISKTSTLTGDLIHSEITEDSLSLNNGNSGEKGKMKLRDIRKRMLVGDAATESISDVVKTRKLESDALEDALFSMNSDLQVSGITGEFVELDALEGNSNESMKKGTKYKCELCEAEFYSQERYLFHVERHDSENFDEFIRCSLCKKDFSTEDQLWEHRRYHIADDPEVGEASPSNIDVLQSERTRKSSKSTCDDCGARFVLRERYEFHIERHKFGNIKQFSCMICDKRFKSENILWDHYQYQHKSGERFACVTCDKTFVKRANLNYHLKTFGHKGGRVVASPDQIPQNEADNGVKLSDVGKPRPKITCADCGARFVLQERYEFHMERHKSGRMDTCVCTLCGRESTNENVLWDHYQYMHKRTKRYACTTCGKLFHKQSMLSRHQIKYGHKGTREIDVDTDGNSVAVDSAAFKKVIAEEVVEMKSVNCVLCGEVVWGVDPNLINDAVTCASCEGPGLSLQVDSDGAKVISRRQYHCNMCNKHFTTKDRLEYHIMRHSENMEEFVCSTCGKELSTEQALFEHYLFVHKGARPHVCELCGKSYQFKARLKEHMRSHSGERPFACEICGQRCMTNNALRSHKKTHITEKRFPCQICKKAFRKRQDLNEHLERHWKNDKTMMFPQVFSCAVCMEMFPTFRVLKKHMKETHSVESQDPILTDLQPWFECEDCHEKFKHQMSLKVHRERAHEGKMRPVYHCDVCNVTYKNARVLSNHIKNKHEGGKRYKCAQCGKEYNQSTSLHNHILLHTGEKPFSCEHCEMTFRTKESRDHHRRKHTGERPYKCPRCDKAFATTTQRREHRKRVHDEGNTHSCPECGKVCFDEHGVRSHLNTHFSDRFKNIQENQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01412552; iTF_00938954; iTF_01411759; iTF_00060551; iTF_00939822; iTF_01413616; iTF_01414405;
90% Identity: iTF_01411759;
80% Identity: -