Basic Information

Insect: Rhogogaster chlorosoma
Gene Symbol: -
Assembly: GCA_944452905.1
Location: CALYCC010000053.1:2441679-2443969[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00099 0.15 13.5 0.1 1 22 116 137 116 139 0.91

2 13 1.3e-06 0.0002 22.6 1.3 1 23 146 168 146 168 0.98

3 13 1.7e-06 0.00027 22.2 6.6 1 23 174 196 174 196 0.98

4 13 0.00013 0.019 16.3 6.1 2 23 213 234 213 234 0.98

5 13 1.6e-08 2.5e-06 28.6 3.1 1 23 239 261 239 261 0.98

6 13 3.7e-07 5.7e-05 24.3 0.8 1 23 266 288 266 288 0.98

7 13 1.3e-08 2e-06 28.9 2.5 1 23 294 316 294 316 0.98

8 13 1.6e-05 0.0025 19.1 8.1 1 23 372 394 372 394 0.97

9 13 2.5e-05 0.0039 18.5 0.7 1 23 447 469 447 469 0.98

10 13 5.1e-06 0.00079 20.7 2.0 2 23 485 506 485 506 0.98

11 13 5.9e-06 0.0009 20.5 1.3 1 23 511 533 511 533 0.98

12 13 2.7e-05 0.0041 18.4 3.1 1 23 539 561 539 561 0.93

13 13 0.00018 0.027 15.8 5.8 1 23 567 589 567 589 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00099	0.15	13.5	0.1	1	22	116	137	116	139	0.91
2	13	1.3e-06	0.0002	22.6	1.3	1	23	146	168	146	168	0.98
3	13	1.7e-06	0.00027	22.2	6.6	1	23	174	196	174	196	0.98
4	13	0.00013	0.019	16.3	6.1	2	23	213	234	213	234	0.98
5	13	1.6e-08	2.5e-06	28.6	3.1	1	23	239	261	239	261	0.98
6	13	3.7e-07	5.7e-05	24.3	0.8	1	23	266	288	266	288	0.98
7	13	1.3e-08	2e-06	28.9	2.5	1	23	294	316	294	316	0.98
8	13	1.6e-05	0.0025	19.1	8.1	1	23	372	394	372	394	0.97
9	13	2.5e-05	0.0039	18.5	0.7	1	23	447	469	447	469	0.98
10	13	5.1e-06	0.00079	20.7	2.0	2	23	485	506	485	506	0.98
11	13	5.9e-06	0.0009	20.5	1.3	1	23	511	533	511	533	0.98
12	13	2.7e-05	0.0041	18.4	3.1	1	23	539	561	539	561	0.93
13	13	0.00018	0.027	15.8	5.8	1	23	567	589	567	589	0.97

Sequence Information

Coding Sequence: ATGGAACGTGAGGATAATATACTGTTCGACAGCGTCGACGGGATGAAACACATCGTCGGAGATCCTCTAGATAGAGATGTCTCAGCTCTGAGAGGTTTCCTCGACTATGTCGAGACCATAACGACTCAAGAAATAAAAATCGAGATACAGGGTTCGGCGAAAACTAGCAATGCCGCTGTTTCCATTCCCGCAAAATTTTCTGATATTAATCTAATGGATTTAATGAGGAAAGAATCTCTGGAAAAATCATCGATTCAATACAATACCTTGCCTGAGCAGCAGCAACTGTTCACCGAGGGTACTGCCGATGTTAATTGGAAGCTTAATGATGGAAATCCAGGCCTTTATCGCTGCGCTATTTGCCAGGTTCAATTCTCCAGTCGAGTTTCTCTGGACAGACACATCGTGGACTTACATCTTGGCACAACGGGTCGTTTCCAGTGCGATATTTGCCATAAAGAATTTTCTAGAGTCTCCGACTTGGCTAGACACAAGCTAATACATTCAGGCGTTAAACCATTCCAATGTAACACTTGCCATAAGCAATTTTCTAGACAAGATCACCTCAAGCAACATATACTCAGCCATTCGCAGTGCTCTGATAGCGAGCTATTCGCTTTTGAGAACGGATTGAATAGGTGTACTATCTGCCATAAGCAATTATCACGGCCTCAACACTTGAGGACTCACATGCGACAACATTTGGGGACTTTGTTCGAGTGCGATAAATGCAACAAGAGATTTTCACGGGCTTCTCATCTCAGAGCTCACATGCGTCTTCACTTGGGTACATGTTTTCGCTGTGATATTTGCCAGAAGGAATTTTCTAGACCTTCGGATTTGGACAGACATAAGCTTACCCATTTGGACAAGAAATTATTTGAGTGTCCTACTTGCCAGAAGAAATTTTCCAGGAAAGATAATCTGAAGAAGCACATGCTTTCTCATGTGGAATCTACGCCGCCGAATGAAATTAACCATCGTCAGAATTACTTTGCGGAAAATCTGTGTTTGAATACGAAGAAAAATTGCCAATGCAGTATTTGCATAGCGAAAATTTCTTTGCCTATCGAATTCGAAGGACATACGATCATTCACTCTGATATAAGATGCCACGAATGTCACGTTTGCAAGAAATATTTCACCAGGAAAGATCATTTGAAGAGACACCTTGCTTCGCACAAGACCTTACCTTGCGATCAGTCGGTTGATCAATACCTTGCAAGTAGGAGAACTAAGCAGCAAATGCTTCTGAATGTAGTTTCAGTTTCAAACTCCTTCGATTCGAGGTTTAATTTCGATAAAAGCATGTATCCCCATGATTGGAGAGAGAAGAAATTCGAATGTGCGATTTGTGAGAAGCGATTTAATAGGAAAGTTAGATTAAAAGAACACGTTCGTCTGCATGGAGACGGTGATTTCGAGCCTAATGATGGGGACAAGGAGCAAAACAGATGTAATATTTGTCAGAAACAATTATCACGCCCAGAACATTTAAAGGCACACATGCGACTGCATTTGGGGACACTTTTTAAGTGCGAAACTTGCCAGAAAGAATTTTCAAGATTGTCAGACTTGGACAGACACAAGCTGGTTCATTCGGGGCTTAAACAATTTATATGTATTATTTGCCACAAACAATTCTCGCGGAAAGATTACCTAAAGAATCACATGCTCTCACATGCTAATCAAAAATCATTCGAATGCGACAAGTGTAAAAAGCGTTTTACCTATTTCACCAATTTGAGAAATCACTTGCATCTTCATATAGGGGATTAA
Protein Sequence: MEREDNILFDSVDGMKHIVGDPLDRDVSALRGFLDYVETITTQEIKIEIQGSAKTSNAAVSIPAKFSDINLMDLMRKESLEKSSIQYNTLPEQQQLFTEGTADVNWKLNDGNPGLYRCAICQVQFSSRVSLDRHIVDLHLGTTGRFQCDICHKEFSRVSDLARHKLIHSGVKPFQCNTCHKQFSRQDHLKQHILSHSQCSDSELFAFENGLNRCTICHKQLSRPQHLRTHMRQHLGTLFECDKCNKRFSRASHLRAHMRLHLGTCFRCDICQKEFSRPSDLDRHKLTHLDKKLFECPTCQKKFSRKDNLKKHMLSHVESTPPNEINHRQNYFAENLCLNTKKNCQCSICIAKISLPIEFEGHTIIHSDIRCHECHVCKKYFTRKDHLKRHLASHKTLPCDQSVDQYLASRRTKQQMLLNVVSVSNSFDSRFNFDKSMYPHDWREKKFECAICEKRFNRKVRLKEHVRLHGDGDFEPNDGDKEQNRCNICQKQLSRPEHLKAHMRLHLGTLFKCETCQKEFSRLSDLDRHKLVHSGLKQFICIICHKQFSRKDYLKNHMLSHANQKSFECDKCKKRFTYFTNLRNHLHLHIGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00060529;
90% Identity: iTF_01303616;
80% Identity: iTF_01303616;