Basic Information

Insect: Rhogogaster chlorosoma
Gene Symbol: -
Assembly: GCA_944452905.1
Location: CALYCC010000053.1:2441679-2443969[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.53 4.8e+02 1.8 0.1 17 29 116 128 105 144 0.74

2 14 0.0033 3 8.9 0.1 16 38 145 164 136 166 0.85

3 14 0.0076 6.9 7.7 2.6 18 39 175 193 172 200 0.78

4 14 0.00014 0.13 13.3 2.7 15 39 210 235 204 238 0.87

5 14 0.018 16 6.5 1.0 17 40 239 259 236 262 0.87

6 14 0.063 57 4.8 0.4 17 28 266 277 261 284 0.84

7 14 0.0014 1.3 10.1 1.2 12 39 289 313 281 327 0.83

8 14 2.5 2.2e+03 -0.3 1.9 12 27 339 354 330 356 0.76

9 14 4.7 4.2e+03 -1.2 6.5 18 40 373 392 361 396 0.85

10 14 0.00093 0.84 10.7 0.4 10 38 440 465 437 469 0.77

11 14 0.00028 0.25 12.3 0.7 13 40 480 504 474 507 0.75

12 14 0.16 1.4e+02 3.5 1.0 6 28 502 522 498 534 0.78

13 14 0.0023 2.1 9.4 2.6 17 37 539 556 528 563 0.78

14 14 0.0052 4.7 8.2 2.3 6 39 557 586 552 588 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.53	4.8e+02	1.8	0.1	17	29	116	128	105	144	0.74
2	14	0.0033	3	8.9	0.1	16	38	145	164	136	166	0.85
3	14	0.0076	6.9	7.7	2.6	18	39	175	193	172	200	0.78
4	14	0.00014	0.13	13.3	2.7	15	39	210	235	204	238	0.87
5	14	0.018	16	6.5	1.0	17	40	239	259	236	262	0.87
6	14	0.063	57	4.8	0.4	17	28	266	277	261	284	0.84
7	14	0.0014	1.3	10.1	1.2	12	39	289	313	281	327	0.83
8	14	2.5	2.2e+03	-0.3	1.9	12	27	339	354	330	356	0.76
9	14	4.7	4.2e+03	-1.2	6.5	18	40	373	392	361	396	0.85
10	14	0.00093	0.84	10.7	0.4	10	38	440	465	437	469	0.77
11	14	0.00028	0.25	12.3	0.7	13	40	480	504	474	507	0.75
12	14	0.16	1.4e+02	3.5	1.0	6	28	502	522	498	534	0.78
13	14	0.0023	2.1	9.4	2.6	17	37	539	556	528	563	0.78
14	14	0.0052	4.7	8.2	2.3	6	39	557	586	552	588	0.82

Sequence Information

Coding Sequence: ATGGAACGTGAGGATAATATACTGTTCGACAGCGTCGACGGGATGAAACACATCGTCGGAGATCCTCTAGATAGAGATGTCTCAGCTCTGAGAGGTTTCCTCGACTATGTCGAGACCATAACGACTCAAGAAATAAAAATCGAGATACAGGGTTCGGCGAAAACTAGCAATGCCGCTGTTTCCATTCCCGCAAAATTTTCTGATATTAATCTAATGGATTTAATGAGGAAAGAATCTCTGGAAAAATCATCGATTCAATACAATACCTTGCCTGAGCAGCAGCAACTGTTCACCGAGGGTACTGCCGATGTTAATTGGAAGCTTAATGATGGAAATCCAGGCCTTTATCGCTGCGCTATTTGCCAGGTTCAATTCTCCAGTCGAGTTTCTCTGGACAGACACATCGTGGACTTACATCTTGGCACAACGGGTCGTTTCCAGTGCGATATTTGCCATAAAGAATTTTCTAGAGTCTCCGACTTGGCTAGACACAAGCTAATACATTCAGGCGTTAAACCATTCCAATGTAACACTTGCCATAAGCAATTTTCTAGACAAGATCACCTCAAGCAACATATACTCAGCCATTCGCAGTGCTCTGATAGCGAGCTATTCGCTTTTGAGAACGGATTGAATAGGTGTACTATCTGCCATAAGCAATTATCACGGCCTCAACACTTGAGGACTCACATGCGACAACATTTGGGGACTTTGTTCGAGTGCGATAAATGCAACAAGAGATTTTCACGGGCTTCTCATCTCAGAGCTCACATGCGTCTTCACTTGGGTACATGTTTTCGCTGTGATATTTGCCAGAAGGAATTTTCTAGACCTTCGGATTTGGACAGACATAAGCTTACCCATTTGGACAAGAAATTATTTGAGTGTCCTACTTGCCAGAAGAAATTTTCCAGGAAAGATAATCTGAAGAAGCACATGCTTTCTCATGTGGAATCTACGCCGCCGAATGAAATTAACCATCGTCAGAATTACTTTGCGGAAAATCTGTGTTTGAATACGAAGAAAAATTGCCAATGCAGTATTTGCATAGCGAAAATTTCTTTGCCTATCGAATTCGAAGGACATACGATCATTCACTCTGATATAAGATGCCACGAATGTCACGTTTGCAAGAAATATTTCACCAGGAAAGATCATTTGAAGAGACACCTTGCTTCGCACAAGACCTTACCTTGCGATCAGTCGGTTGATCAATACCTTGCAAGTAGGAGAACTAAGCAGCAAATGCTTCTGAATGTAGTTTCAGTTTCAAACTCCTTCGATTCGAGGTTTAATTTCGATAAAAGCATGTATCCCCATGATTGGAGAGAGAAGAAATTCGAATGTGCGATTTGTGAGAAGCGATTTAATAGGAAAGTTAGATTAAAAGAACACGTTCGTCTGCATGGAGACGGTGATTTCGAGCCTAATGATGGGGACAAGGAGCAAAACAGATGTAATATTTGTCAGAAACAATTATCACGCCCAGAACATTTAAAGGCACACATGCGACTGCATTTGGGGACACTTTTTAAGTGCGAAACTTGCCAGAAAGAATTTTCAAGATTGTCAGACTTGGACAGACACAAGCTGGTTCATTCGGGGCTTAAACAATTTATATGTATTATTTGCCACAAACAATTCTCGCGGAAAGATTACCTAAAGAATCACATGCTCTCACATGCTAATCAAAAATCATTCGAATGCGACAAGTGTAAAAAGCGTTTTACCTATTTCACCAATTTGAGAAATCACTTGCATCTTCATATAGGGGATTAA
Protein Sequence: MEREDNILFDSVDGMKHIVGDPLDRDVSALRGFLDYVETITTQEIKIEIQGSAKTSNAAVSIPAKFSDINLMDLMRKESLEKSSIQYNTLPEQQQLFTEGTADVNWKLNDGNPGLYRCAICQVQFSSRVSLDRHIVDLHLGTTGRFQCDICHKEFSRVSDLARHKLIHSGVKPFQCNTCHKQFSRQDHLKQHILSHSQCSDSELFAFENGLNRCTICHKQLSRPQHLRTHMRQHLGTLFECDKCNKRFSRASHLRAHMRLHLGTCFRCDICQKEFSRPSDLDRHKLTHLDKKLFECPTCQKKFSRKDNLKKHMLSHVESTPPNEINHRQNYFAENLCLNTKKNCQCSICIAKISLPIEFEGHTIIHSDIRCHECHVCKKYFTRKDHLKRHLASHKTLPCDQSVDQYLASRRTKQQMLLNVVSVSNSFDSRFNFDKSMYPHDWREKKFECAICEKRFNRKVRLKEHVRLHGDGDFEPNDGDKEQNRCNICQKQLSRPEHLKAHMRLHLGTLFKCETCQKEFSRLSDLDRHKLVHSGLKQFICIICHKQFSRKDYLKNHMLSHANQKSFECDKCKKRFTYFTNLRNHLHLHIGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00060529;
90% Identity: iTF_01303640;
80% Identity: iTF_01303640;