Rchl015991.2


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Rhogogaster chlorosoma
Gene Symbol
ZNF236_1
Assembly
GCA_944452905.1
Location
CALYCC010000084.1:3092502-3107864[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 2.4e-05 0.0036 18.6 0.5 2 23 185 206 184 206 0.95
2 28 3.8e-05 0.0059 17.9 0.6 1 23 212 234 212 234 0.98
3 28 3.1e-06 0.00047 21.4 0.4 2 23 240 261 240 261 0.98
4 28 0.0079 1.2 10.7 0.2 3 23 269 289 267 289 0.96
5 28 7.5e-05 0.011 17.0 1.0 2 23 300 321 300 321 0.98
6 28 9.9e-07 0.00015 22.9 1.0 1 23 342 364 342 364 0.99
7 28 7e-06 0.0011 20.3 0.4 1 20 370 389 370 392 0.94
8 28 0.00011 0.017 16.5 1.1 1 23 398 421 398 421 0.95
9 28 1.7e-05 0.0026 19.1 3.7 1 23 430 453 430 453 0.98
10 28 6.1e-07 9.3e-05 23.6 1.4 1 23 566 588 566 588 0.99
11 28 2.3e-05 0.0036 18.6 1.1 1 23 594 616 594 616 0.99
12 28 0.017 2.6 9.6 6.0 1 23 622 644 622 644 0.98
13 28 0.00067 0.1 14.0 3.0 1 21 650 670 650 672 0.94
14 28 0.00036 0.055 14.9 3.6 1 23 727 749 727 749 0.98
15 28 3.7e-06 0.00057 21.1 3.7 1 23 755 777 755 777 0.99
16 28 1.9e-05 0.0029 18.9 1.5 1 23 783 805 783 805 0.98
17 28 0.00011 0.017 16.5 7.2 1 23 811 833 811 833 0.98
18 28 5.7e-05 0.0088 17.4 6.7 1 23 1154 1176 1154 1176 0.99
19 28 0.052 7.9 8.1 0.8 2 23 1200 1221 1199 1221 0.97
20 28 1.4e-05 0.0022 19.3 1.4 1 23 1227 1249 1227 1249 0.98
21 28 0.012 1.8 10.1 0.9 2 23 1256 1277 1255 1277 0.93
22 28 5.6e-08 8.6e-06 26.9 1.4 2 23 1342 1363 1341 1363 0.98
23 28 0.066 10 7.7 8.0 1 23 1369 1391 1369 1391 0.98
24 28 9.6e-05 0.015 16.7 2.5 1 23 1397 1419 1397 1419 0.98
25 28 0.00093 0.14 13.6 4.2 1 23 1425 1447 1425 1447 0.99
26 28 0.024 3.7 9.1 1.7 3 23 1647 1667 1647 1667 0.99
27 28 6.3e-05 0.0097 17.2 6.5 1 23 1673 1695 1673 1695 0.98
28 28 2.5e-06 0.00039 21.6 3.8 1 23 1701 1724 1701 1724 0.96

Sequence Information

Coding Sequence
ATGTTATCGGAGCAAGCTATTCTCGCAGAACACCTTGGGACCAATGCGGAAACTATGCCGCTTGGATTTATCATCTCAGATGATGGGCGAACCCTGCTCGCGGTCACAGAGCGTGACGACGGCGTCCTAGAATTCATGTCTGTACCGGTGACAATCCAGCAGAGTAATATAAGCAACCTGACATCAGCAGCTTTAAAACCGAGCGAAGGAAATCCCATATTTCAAATCACACTTGAAGGAATGACGGGCGATACCACGGCCCAAGCTACAGCAGCTCTCTTTCAAAATCAAAGCTATCACAGTCTACCCGATGTTCCTGATGGCGTGGAATCGTCTTACCAATCGGCGAAAGAAATTCAACTAGATTCTCCTGGCACTGTGCTGTTCACTCCTAGCGGGACGGAAACCAGCAGCTTGGAGAGCAAAAGTTTTGAAATATTTGAGGCCCCTGTGCCTCTGCCGGCTCCTGCTTTACCTACTATTGTTAAACGGAGCCCAGGCAGGCCGAGAAAAGACGGAAGTAGTCCGCCTTCCATTCATACAAACAATCTGAAATGTAAAATATGTGGAAAAGGGTTCAACAGACTAATGTTACTTAGAAGACACGTGGAACAACACGCAGAAGAAAAGCCACATCGTTGTCCGAAGTGCCCGGCCTCTTTTAACGTTCCTACTAATTTTACGCTTCATATGGCAACGCACAACATTGGCGAACCAAAGTGTCCAGAATGTGGACGAAAGTTTGCTAGAATGGCAAGCCTCAAATCTCACATGCTTATGCACGAAAAGGAGGAAAATTTGTTCTGTACCGAGTGCGAGGACGCTTTTACCACCAAGGCTCAGCTAGATGCCCATTTGAAATTACACAATGAGAAATGGACCACGGAAGATGTTCGGAAGTGTAAACTCTGTAACAAACAGTTTACACAGCCAGCTCTTTATCGTCTACATATTCGTGAGCACTATAGATTACAAACGAAGTTAGTTAAGCAGACAAAACGAGGCGTCAAACAGaagaccatgtacaaatgtaaaatatgtttgaaatcatttCAAAAACCCAGTCAGCTCGTACGTCACATCAGGGTTCACACTGGGGAGAAACCTTTCCAGTGCACGATTTGTCCCCGAGCTTTTACACAGAAAGGATCTCTCCAGATTCATATGTGGAAGCACAATGGGTTCAGACCGCACAATTGCAGTTCTTGCAACGCGAAATTTAGTCAAAAAGGTAATTTAAACGCGCATATATTGCGAGTGCATAATGTACCGGATGGAAAGCCTTATTACAAATGCACTTACTGTCCGTGTACCTTCAAAAAACTCGGAAGTCTTAATGCCCACATGAAGAAAATGCATTCGAATCCGGTTAAGAAACCACAAAATTGCGACAGTTCTACTGAAGATATGCAAGCCACAGTTGATACAGTCATGTCTCAATTAGCTATGCTTGAATCCAGTGTTAAAAACCCAGCAGATTCTACCGGAAATAATGCTTCTAATAAAGACATTCTGCAACAAGCTTTAAAAAACAGTGGTTTACCCAGCAAGGACAAGGAATCAGCCTCAGGAGTACAAATTCCAAAGAAGGGTGAAGCACATACTACCATGATCACTTTATTAGACAGCAGTATAGACAGTGCTACGAGAAAATACGTTACTATCAAGCAACGTTCTATAGGAAATATTAGATGGTATACATGTTCCTACTGCTACAAAGAATTCAAGAAACCATCCGATCTTATACGACATTTACGTATTCATACACAGGAAAAACCATTCAAGTGCTCGTATTGTTCCCGATCTTTTGCTGTGAAATCAACAATGATAGCTCACGAAAGAACGCATACAGGAGTGAAGAAATACATGTGTTATAACTGCAATAAGATGTTCGCCTGCCATACCAGCCTAACAACACATATGAGAGTTCATGCCGGAGTAAAACCTTTTGCCTGCAGTATGTGCGACAAATCATTCACAGCGAATACCCTACTCAAAAGTCACATGAAATGCCACGCCAAAGGGAAGACAAAGGCAAGTCCTGAAGCGGAAGTTCTCGCACCATCTATAGTTCTTGAGGAACCGTTGATAATAACCGATGCGGGGAATAAGATCAGCATTGCTCAAGTGCAATCTAAACATCGGCAAGTCTATAACAGCAATGATGTTGCCAGACCGCATAAATGTTGGGTCTGTCCTGCTGCATTCAGAAAAATTAGTCACTTGAAACAACATTACCGAAGGCACACTGGAGAGCGGCCATATAAGTGCCAGAAATGCAATAGGAGGTTTACTTCGAACAGTGTCTTGAAATCTCATCTCCGTACCCACGAGGGATCAAGACCTTATAATTGTTCAATGTGCAATGCGAAATTTTCTACTCAAAGCAGCATGAAACGACATCTTGCTACTCACAGTAATAAGAGACCATTCATGTGCCCTTACTGTCATAAAACTTTCAAGACTTCTGTCAATTGCAGAAAGCATATGAAGATACATAAGCACGAGCTGGCGCAGCAGCAGTTACATCAACAACAGCAACAGCCTACTGAGCTTGAGGCTAAACCAGGGATTACAGTATTATCGGAAAATATTAATCTACCCGATGAAATGGAAGTCACATTTCAGCCGCAAATGGCACCTGATTTTACGCAAGCATTTTCTGATCATTTTCATACAATTCCAGTTGAAAAAGATAAAGCATTGCTGCCTGAAAACAATCCAATAGAAGCTATTGTCAATCAATCACTACCAGCTGGTGAACCCATTAACTTGGGATCAACCCAAACCCTTCATGCAGATGAGACGGGGACTATAACGCTGCCAAATTATTCTGGAGATCAAACACTAACACCGGAAAGTATAAGAGAAATTGAAGAAACGTTGAATCAACAGCTCTTCAATATCGGTATGAATCTCGGACTGGGAGGTAATTTGACGAGGCAAATGAACGAGAGCACTCCCAGCTCTTTGGAACAGCGTGAACAACCTATTTTGAATATTATCTATGAAAATACAAAGAATATAGATGCACCACCAAGTGCTGCGATAAACACTGGAATATTTTCACCACAATTTGACTCCTTTGATATGAGTCAAATCACGTTGCAGGCAGATAACGAGATGGATATCGGAATTACTCCAGCGAATTCTACAAGTATGGCAAGCATTCTGCCTAGGTCAGCTCAAGAAGAGCAGCACTTGGTATCGGTTACTACAACGACGTCAATGCCAGAGGATAATCAATCGAAACAGCCAAGGCATCTGATGGTTGTAAGTTCGATGCAATCCTGTCCTGAATTATCTCGACCAGTTCAGGCCTGCCCAAAATATCCAAAAGTAATTGCAAAAGCAGATACAACCGACGGCTTGGACATACAATCATCCGAAGACACGATAAAAGAAAATATCAAGTCTGAATCTTTGCTTTTGGAAGAAAAACCAGCACAAATTCTTTCCTACCAATGCAAAATCTGTGATAAATATTTTCATAAACAATCTCAATTGAGAACTCATAAGAAGACCCACGCCTTAGCAATGCAGGAAAAACCTCTTAAAATTGAATCAACACCTGAAAACGAATCCGACAATCTATTGCAGTGCCATATGTGTAGTAAATCAGGACTCACAGCCGTTGCCTTAAAGGATCATCTCAAAACACACAGAGGAGCCAAGGAATTTCAGTGCACGGAATGCCCTTTGAAGTTTTGCACAAATGGAGGACTTAGCAGGCATATTAAAATACATAACAATAAAGTGCAATGGAAATGTACATCGTGTGATCTGACGTTTCAAACTAAAGCTCAATTATCAATTCACAAAGAATTTCATCAGAATGATACTAACTTAAACACAGTGGAACCGGACAGTTCCCAAAAAGATCCATTAACAATAGACGGCAACTATTTGACCCATCCTGAAATAGAATTAGAAAACGGTGGTCATCTCTCTGAAAAAGATCTCATTGATGCTGTGGCTGAAAAAGAGACAGATATAAAAAAGGAGAAAAAAGTATATACGAACAaatgcaaatactgtccgaagacctttcgaaaacccagtgatcttgtaaggcatatcagaacccatacaggagagagaccctatcagtgtgaatattgcaacaaatgttttgcagtaaaatgtaccttggattgtcatatgaaagttcatactggtaaaaaaacattttcatgccacgtttgcaacagccttttcacaaccaaaggcagtcttaaggtccacatgagattgcacacagGTTCCAAACCGTTCAAATGTTCGTTCTGCGATTTACGATTCAGAACCTCGGGGCACAGAAAAGTGCACTTATTAACCCACATGAGAGAGCACAAGGATCCATCAAGGCCCAAACCGAAGCCTCGTAAGGTTGCAGCCATTGCTGGAGTTGCTGCTGAACTGGAAAGAACTGTTGAACACGCGGTTAATAATGAAACAGCAATTCCTCAGCCTGGGGAATACCCCAATATTGATTCAATCACGATTGATACTAATACCCTGGCTGATAATATCACTCCGCACATTACTTTCAACGCGGATGGAACCATCCTCAACAACAATGCTATGTTATCTATAAACGAGAGTAATCAGCTTGTCGCTAATCTGCATTTCCTTCTCGCTAATGGGCTAGTCACGATACAGACCGACGACGCACTTCTGCAACAGCTACCTGATGCTGATTCGAATTCAATGGAGCAAACGGAATCGTTGATCGCCTCGCCTGATATGAATGAATCAAATCATCAGGCAGTTTTGTACGAAACCGATGGCATGCCGAATGCGGATACAGAGTCCCATGGGACTTTGGAATTGGATCATTGTGTGGAAATGGGAAGCCCTGACGAGATTGCATCGCTGTCTGACATCGAGGAGAACAAGGCTAAACTGACAATTGATAAGGCTCAGTTCAGAAGAGGCTGCGACGTTTGCGGTAAGACTTTTCTTAAACCTTGTCAAGTGGAACGACACAAGaggatacacaccggtgaaagaccgtataaatgcaatttgtgctctaagtcattcacgcaaaagaatactttgaaaatgcatcagaaacatcataccggagacagaccacatCCCTGTCCGCATTGCGATTTTTCGTTTACGCAAAAGGGGAACTTGAAGACACATCTGAAACGGGTTCATCAGTTGGATACCTTGGGGATAAAGAAACTGCGGAGAGGACAGCACGTGCTTAGTGCTAAATTTACGGAAGATAATTTAGATGAGAGTAGAATAATTGGCTTAGAAGATATCGCGTTCGCTAATATTCCTTGA
Protein Sequence
MLSEQAILAEHLGTNAETMPLGFIISDDGRTLLAVTERDDGVLEFMSVPVTIQQSNISNLTSAALKPSEGNPIFQITLEGMTGDTTAQATAALFQNQSYHSLPDVPDGVESSYQSAKEIQLDSPGTVLFTPSGTETSSLESKSFEIFEAPVPLPAPALPTIVKRSPGRPRKDGSSPPSIHTNNLKCKICGKGFNRLMLLRRHVEQHAEEKPHRCPKCPASFNVPTNFTLHMATHNIGEPKCPECGRKFARMASLKSHMLMHEKEENLFCTECEDAFTTKAQLDAHLKLHNEKWTTEDVRKCKLCNKQFTQPALYRLHIREHYRLQTKLVKQTKRGVKQKTMYKCKICLKSFQKPSQLVRHIRVHTGEKPFQCTICPRAFTQKGSLQIHMWKHNGFRPHNCSSCNAKFSQKGNLNAHILRVHNVPDGKPYYKCTYCPCTFKKLGSLNAHMKKMHSNPVKKPQNCDSSTEDMQATVDTVMSQLAMLESSVKNPADSTGNNASNKDILQQALKNSGLPSKDKESASGVQIPKKGEAHTTMITLLDSSIDSATRKYVTIKQRSIGNIRWYTCSYCYKEFKKPSDLIRHLRIHTQEKPFKCSYCSRSFAVKSTMIAHERTHTGVKKYMCYNCNKMFACHTSLTTHMRVHAGVKPFACSMCDKSFTANTLLKSHMKCHAKGKTKASPEAEVLAPSIVLEEPLIITDAGNKISIAQVQSKHRQVYNSNDVARPHKCWVCPAAFRKISHLKQHYRRHTGERPYKCQKCNRRFTSNSVLKSHLRTHEGSRPYNCSMCNAKFSTQSSMKRHLATHSNKRPFMCPYCHKTFKTSVNCRKHMKIHKHELAQQQLHQQQQQPTELEAKPGITVLSENINLPDEMEVTFQPQMAPDFTQAFSDHFHTIPVEKDKALLPENNPIEAIVNQSLPAGEPINLGSTQTLHADETGTITLPNYSGDQTLTPESIREIEETLNQQLFNIGMNLGLGGNLTRQMNESTPSSLEQREQPILNIIYENTKNIDAPPSAAINTGIFSPQFDSFDMSQITLQADNEMDIGITPANSTSMASILPRSAQEEQHLVSVTTTTSMPEDNQSKQPRHLMVVSSMQSCPELSRPVQACPKYPKVIAKADTTDGLDIQSSEDTIKENIKSESLLLEEKPAQILSYQCKICDKYFHKQSQLRTHKKTHALAMQEKPLKIESTPENESDNLLQCHMCSKSGLTAVALKDHLKTHRGAKEFQCTECPLKFCTNGGLSRHIKIHNNKVQWKCTSCDLTFQTKAQLSIHKEFHQNDTNLNTVEPDSSQKDPLTIDGNYLTHPEIELENGGHLSEKDLIDAVAEKETDIKKEKKVYTNKCKYCPKTFRKPSDLVRHIRTHTGERPYQCEYCNKCFAVKCTLDCHMKVHTGKKTFSCHVCNSLFTTKGSLKVHMRLHTGSKPFKCSFCDLRFRTSGHRKVHLLTHMREHKDPSRPKPKPRKVAAIAGVAAELERTVEHAVNNETAIPQPGEYPNIDSITIDTNTLADNITPHITFNADGTILNNNAMLSINESNQLVANLHFLLANGLVTIQTDDALLQQLPDADSNSMEQTESLIASPDMNESNHQAVLYETDGMPNADTESHGTLELDHCVEMGSPDEIASLSDIEENKAKLTIDKAQFRRGCDVCGKTFLKPCQVERHKRIHTGERPYKCNLCSKSFTQKNTLKMHQKHHTGDRPHPCPHCDFSFTQKGNLKTHLKRVHQLDTLGIKKLRRGQHVLSAKFTEDNLDESRIIGLEDIAFANIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01414380;
90% Identity
iTF_01413599;
80% Identity
-