Rchl012087.1
Basic Information
- Insect
- Rhogogaster chlorosoma
- Gene Symbol
- -
- Assembly
- GCA_944452905.1
- Location
- CALYCC010000053.1:2181019-2189873[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.5e-15 5.8e-11 42.8 0.3 10 70 272 330 267 334 0.89
Sequence Information
- Coding Sequence
- ATGGATGCGGCGGACCTAAATGGCGGGAACGCCGAGGCAATGCCTAACCTCGAAAAATTGGCAAACTCTAAATCAAACGATTCCTTAGATTCGGTGGATAAATTAAACGCGGATAAAGAATTGGAGTCAGAAGTGAATGGGGAGGTGAAAAGTTCGCCGAAGAAAACCACACCTGGTAAGAGAAAAATGCGTAAATCTAAAGCCAACTCGACAAGCACCATAGAAAGTGGTTCCAAGCCAAAGACGAGAGGACGAAAGCGAAAATTATCTGAAAGAGAAGATATCAGCTCTGAAGAATCCACCGAGTTCAATGGCTTCGACGTTCAAGGTTCAGAGAACGAAGAACCCGGCAGTCATGTGCTAAAGAAGCTTATCGCGGAAGCTGAATCGGCAGAATCACCAAAAGGTAAACGTCCGAAACGTTCTATATCAAAAAATGCGTCTAAAATGTCAGGGAAAAGTAACGAGGCTAAGGCTTTGTTGGAAAAAGAAGACGACGTCGACTCAGACGAGAACAAGATGCTGATAGACGATGACGTCGATCTGAATGAAGAACAGAAAGCTAAGAAAGATAAAGAGTCAGAAGAGAAGTCAGAGACAGATTCCATCGGCGATCCGAATAGCTTAGAGTCTGAAAGTGAGCCACAGAAAACAGAAGAGTCTTCTACAAAGTCTGCAAATTCTTCAACGAACAGCAGCCCGTCTGCAATATCTCAGAAATCAAAAGCAAGTAGATTATCGCGCGGCGCAAGTCCAGGCAGTGCAATCAAGCAAAAGATTGTCGTCGATCTGTCAATTCCTGCATACAAAGAGCCGTTCAAATACGGATGGAGAAGAGAGCTGGTTTACAGAGCCGGAACAGAGAATAACTTGAAAAGAATGGCAGATATTTATTATTATACCCCTAAAGGCAAGAAGGTCAGGAGCTTCAGAGAAGTAGCAGAATTTCTTAACACCAAGGAACTCACTATTGATAATTTTACCTTCTTCAAAGAACCAATCGGCATCGATGATCCGGAAAAGGAAATAATTCGAGATGCAAAACGAATTAAAGATTTAGGTCCAGCTACTCCAACACCAGCCCGCAAAGCTCCAGCCAAAAAAGCAGCACCTCCTAAAAAAGTGGTAGAAGAAACCCCACCCCCACCTAAACCTGTCGGAAAATCTCCAAAAGTAGCTGCGAGTGCCCTCAAAGTGAAATTGCCTGCAAAGAAGGCGACTCCAAAAGCCGAGGTAAAACCACCCGTTGAAGAGAGTGAAATGCTGCCGCCACAATGGAGTTCTCCAGCTGCAAGACGTAGTCAACCTGCGATTGAAAAGACTCCACCACCAAAATCTAAAAGGGCATTGAAGGCCAAAGTCCAGGAACCTTGCAGTATACGGTGTACATCAAGTATGGGCCTGATTCCAAGTCTTCAGTGCCGTGTCTGCCTCTGTCTTTATCACCCCGAATGTATTGACGGCGCCGAACTTACTGGCGGCGATGACTACATATGCAAGAACTGCCAGCAGAAGACTGAAGATTCATATCAGCAGCAGCGTCAACAAATTAGTCAACCTTTAACGCCGCCGCCGTTAATTCCGATTAGTATGTTAGGAGGTCAGAATGCAAAATCTAAACATCCGCTGAACTCTACTCCTCCAAAATTGCAAAGAATACCAAAGTCTGAGAACCCGGATTCACAGGCGAGAAATAGTCAGAAAATATCGAGGTCTATAATGAAGAAAAAATCACCTACCGTTGAAAATAATGAAGGTAGTTGGTACACGCATGCAAGAAACGAGCTGTTGCACAGCTGCGATGGTTCGTTGCCAAAACCTGCGCAAAATATTGCTCTAATGGCTGGAAAAAAGTACATCGTTGTACCTAAGAATAATTCAATGGCTGTACAACCTGCGGTGACGGTCAAACCTGACAAAATAGGTGATAAACCACCTATACTTAAAGGGAGTTCTCCGACTGGAGTTTCTAACATAATAGAAAATTCAATATCTTGTTCTATGCTTTCGAAAGGTTTGGCAAATAAGGATAGATCTTTTAACGACATAGCAAACTCTGCTGGGAATGAATCGTGTACCGAAGTCGACTCGATATACACAGACGAAATTGGAACGGGATCAATGAGTATTAATGATCCATTATTTAAGAAATCAAATACAACGGACTCGGTAGAAATGAATACGTCGAATGTGATGCATGCGAAGACAGTCGGTGTAGTGAATCGCAGAAATTCGAGAACTGCATCATTACTGAAAATGTATAATGCTAAGAAATTCGGAAACTTGGACTCGCCGGATAATGACTTAGAACGTACACAGAATCACGTTTATTCAAAAGGGTCGGGGACCTCGAAAACACGCAACAAAAAAAGGCAGCTGCAAGTCGAAAGCGAACAGAGACAACATTTCATGGTATCAGTTTGCGCCGGTTATCATGCCCTCTCGAGAGTCTTTCAATATCTTAAAGTTCAAGAGCTTCTCAGGGCAGCTCGGGTGTGTAAAATGTGGCGAGACTTGGCGGCACATCCTGCGTTATGGAAAACAGTTCGTATGAAAAACAGTCAGGTAACTGACTGGGACGGTCTAGCAGAATCCCTGAAGAGACACGGCACCCAACATTTGGATCTGAGGAAAATGCTTGTCGCAGGAGAATCAGATGATATATGGAAAAAATTTGTCAACGTCATTCCACGCGTCACCAGCTTAGTAAGGCTCGAGTTGTGCAGGTGTCCTGTGTCCGTTGTCGAAGATGTAATAAAGAGCTGTCCTCAACTGGAAGTTCTTAGCGCTATGACGATAAAATGCGATTCCCTTAATCTGGAATCAGCTGGGAATTTGAAAAATTGCTTGGAACTCAAGCTCAAAGCGATAAGCGGAATGTCGCTCAACGGAGATCTTACGCCCCTGAAAGACTTGACGCAACTAACACATTTGAGTTTGACATCGGTGAAGGAACTTGGAAAGAAAAAAATCGACATTGTAGAGTCTCTTACGAATTTGGAGACCCTGGAGCTCGGGGAGTGTTCAGATTTCCCTGACAAATTCGGAACTGTAGTTCTCCAGAAGTTACAAAAGCTGGAGCGTCTTAGATTGGAAAAGGGGCAAGGTTCCTGCTGTACTTTTGACATCCTAGAGGGTGTCTCAAAGCTGGATAATTTGAGTCAACTTGAGTTGGTTAATTTCGACGTTAAAAATGGTTTCGACAAATATTTAGCCAACTGTAAAAACATCAAGAGATTACTGATTATACCTACGTATATATCGCAATCTGCAACGTCAAACAACATGGTGCTTGGTGGTGTGACAGAGTTGTCTAATAATTTGACACATTTTGTCTGGGGAGTAACGCTGGAGTTATTGAGAGTTACTGAATTGTTTGTCGACCAGTGTAACCAGATGAGTAAACAAGTAACGGGGGATTCCATTCCCGTTTTAAAACCTGTTCCCTGTTTGAAGTTAATTCAAGATATCGAAGACGAGAGTAACGAAGCCCTTAAAGGCGATGACAAACAACAGCCAAACTTAACAAATCCACAGGTGGATATTCTGCCTCTTCCTCAATTGCAAAAGTTGCTTTTGACTGCGTTACCAAAAACGCGTGTTAAGATTCTAAAAATTCCCTTCCACGCTACATGGCGGCAAAGCATTTCTGACTCTACTACGCAGTAA
- Protein Sequence
- MDAADLNGGNAEAMPNLEKLANSKSNDSLDSVDKLNADKELESEVNGEVKSSPKKTTPGKRKMRKSKANSTSTIESGSKPKTRGRKRKLSEREDISSEESTEFNGFDVQGSENEEPGSHVLKKLIAEAESAESPKGKRPKRSISKNASKMSGKSNEAKALLEKEDDVDSDENKMLIDDDVDLNEEQKAKKDKESEEKSETDSIGDPNSLESESEPQKTEESSTKSANSSTNSSPSAISQKSKASRLSRGASPGSAIKQKIVVDLSIPAYKEPFKYGWRRELVYRAGTENNLKRMADIYYYTPKGKKVRSFREVAEFLNTKELTIDNFTFFKEPIGIDDPEKEIIRDAKRIKDLGPATPTPARKAPAKKAAPPKKVVEETPPPPKPVGKSPKVAASALKVKLPAKKATPKAEVKPPVEESEMLPPQWSSPAARRSQPAIEKTPPPKSKRALKAKVQEPCSIRCTSSMGLIPSLQCRVCLCLYHPECIDGAELTGGDDYICKNCQQKTEDSYQQQRQQISQPLTPPPLIPISMLGGQNAKSKHPLNSTPPKLQRIPKSENPDSQARNSQKISRSIMKKKSPTVENNEGSWYTHARNELLHSCDGSLPKPAQNIALMAGKKYIVVPKNNSMAVQPAVTVKPDKIGDKPPILKGSSPTGVSNIIENSISCSMLSKGLANKDRSFNDIANSAGNESCTEVDSIYTDEIGTGSMSINDPLFKKSNTTDSVEMNTSNVMHAKTVGVVNRRNSRTASLLKMYNAKKFGNLDSPDNDLERTQNHVYSKGSGTSKTRNKKRQLQVESEQRQHFMVSVCAGYHALSRVFQYLKVQELLRAARVCKMWRDLAAHPALWKTVRMKNSQVTDWDGLAESLKRHGTQHLDLRKMLVAGESDDIWKKFVNVIPRVTSLVRLELCRCPVSVVEDVIKSCPQLEVLSAMTIKCDSLNLESAGNLKNCLELKLKAISGMSLNGDLTPLKDLTQLTHLSLTSVKELGKKKIDIVESLTNLETLELGECSDFPDKFGTVVLQKLQKLERLRLEKGQGSCCTFDILEGVSKLDNLSQLELVNFDVKNGFDKYLANCKNIKRLLIIPTYISQSATSNNMVLGGVTELSNNLTHFVWGVTLELLRVTELFVDQCNQMSKQVTGDSIPVLKPVPCLKLIQDIEDESNEALKGDDKQQPNLTNPQVDILPLPQLQKLLLTALPKTRVKILKIPFHATWRQSISDSTTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00938693; iTF_01412324; iTF_01411509; iTF_01414176; iTF_01413179; iTF_00939551; iTF_00718566; iTF_01048907; iTF_01048226; iTF_00060210; iTF_01200151;
- 90% Identity
- iTF_01412324;
- 80% Identity
- -