Basic Information

Insect: Rhogogaster chlorosoma
Gene Symbol: bab2
Assembly: GCA_944452905.1
Location: CALYCC010000113.1:100262-111879[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 1.2e-11 5.7e-09 36.5 0.0 1 39 378 417 378 421 0.90

2 4 1.6e-11 7.7e-09 36.1 0.1 2 39 433 470 432 473 0.94

3 4 5.8e-18 2.8e-15 56.7 0.0 2 45 488 532 487 532 0.97

4 4 3.4e-18 1.6e-15 57.4 0.1 1 42 539 581 539 582 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	1.2e-11	5.7e-09	36.5	0.0	1	39	378	417	378	421	0.90
2	4	1.6e-11	7.7e-09	36.1	0.1	2	39	433	470	432	473	0.94
3	4	5.8e-18	2.8e-15	56.7	0.0	2	45	488	532	487	532	0.97
4	4	3.4e-18	1.6e-15	57.4	0.1	1	42	539	581	539	582	0.97

Sequence Information

Coding Sequence: ATGAATCGAGATTGGGGAACACACTACAGtggagggatggcggggcagcactactgcctgcgctggaacaattaccagtcgaacatgacttccgtgttccatcagctgcttcaaaccgaagcattcgtcgacgtgactttagcctgcaacgaggcctccctcaaagctcacaaggtggttttatccgcgtgcagttcgtactttcaaaagttattgctttcgaatccttgcaaacatccgaccatcattatgcctcaggacgtttgtttcacggaccttaaattcatcatagaattcgtctacagaggcgaaatagacgtttcacaagCCGAATTACAGTCCTTATTGAAAACTGCTGATCAATTGAAGATCAAGGGCCTCTGCGAAGTACCAGAAAGTAAAGAGGGTCCGCCGTCAGTTAGCTTAAGTTCACCGCCTAGAGATCGTGATTCTGCAGCGACGCCACGTTTGAATTATACTAAATTAAGAAGACAGCATCATCCGAGATACAAAAGGCCCAGATTTGAGGCCAGGTCTGATTCGAGGATATTCGAAAAATATAAAGAGGAGGAAACCGAGGGATTTTGTCGAGCCGATAAAGAGAATCACAGGGACTGGCAGACTGAAGATGAGGAATTCGGCGAACCTACAGTAGTTTTAGAATCGAGACAGAAGGACTTGAACAACGGTAACACAAACAACAACAACGGTGAGATGTTTTGTCACACAGGAATGGGACATTACGGTCATCATACGGATCCAGGAGACGTTGATTTACCACCCGAAACTCAACCCACACCTCCAAGCGCTACTCTTGTCGGTACAACAATAACGCATTTGAGAGACCCCGACCACCAGTCGACAGAAATACAAAATTGTGAGAGTGTTAAAATAAAATTTGAGACACTGCACACGATGGACTCGACGGACACAATAGATATAGATAGTCATATGTCAGATCGAGCTAGCGTCAGTTCAAAAACAACAGGAGATAATGACAACATGATGATGATCACTCCAGAACTACTCGGCCTAATGCCATCCGGCAGTTCCGGACATTCTGATGCCGGAGACAACGGGAGATCACATTCCGGACAAATCGGTCCTCATCATCATGGATCTAAATCTTGGACCCAGGATGACATGGATGCAGCTCTTGATGCCTTAAGAAATCACGATATGAGTCTCACCAAGGCTTCAGCGACATTTGGAATCCCTTCGACGACTTTGTGGCAGCGAGCGCATCGGCTGGGTATTGATACTCCCAAAAAGGACGGACCGACAAAGTCATGGAGTGACGAGAGTCTGAATAACGCTTTGGAAGCTCTGAGAACTGGTACTATTTCTGCAAATAAAGCGTCCAAAGCCTTCGGCATACCTTCTAGCACGTTGTATAAAATTGCGAGAAGAGAAGGTATCAGATTAGCCGCGCCTTTCAATGCTAGTCCGACTACTTGGTCACCTGCTGATCTCGACAGAGCCTTGGAAGCCATTAGATCGGGACAAACTTCTGTACAAAGAGCTTCGACGGAATTCGGTATACCGACCGGCACACTTTACGGAAGATGTAAAAGAGAGGGAATCGAATTGAGCAGGAGTAATCCTACTCCGTGGAGCGAAGACGCTATGACCGAAGCTTTGGAAGCAGTTAGAATGGGTCATATGAGCATCAATCAAGCTGCGATACATTATAATTTACCATATTCCTCGTTATATGGTAGATTTAAAAGAGGTAAATATGAAGAACCTGTAGGAAATGAAATGTCACAGGACAGTAACAGTCTTCATTATCACAGCCCGAACCAAAACCACTCTTCTTCTGTTCCCGATCAAATGCCCTATCAGGGTAGCTGA
Protein Sequence: MNRDWGTHYSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFTDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESKEGPPSVSLSSPPRDRDSAATPRLNYTKLRRQHHPRYKRPRFEARSDSRIFEKYKEEETEGFCRADKENHRDWQTEDEEFGEPTVVLESRQKDLNNGNTNNNNGEMFCHTGMGHYGHHTDPGDVDLPPETQPTPPSATLVGTTITHLRDPDHQSTEIQNCESVKIKFETLHTMDSTDTIDIDSHMSDRASVSSKTTGDNDNMMMITPELLGLMPSGSSGHSDAGDNGRSHSGQIGPHHHGSKSWTQDDMDAALDALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRMGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVGNEMSQDSNSLHYHSPNQNHSSSVPDQMPYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_01413017;
80% Identity: iTF_01303572;