Basic Information

Insect: Rhodophaea formosa
Gene Symbol: -
Assembly: GCA_963082605.1
Location: OY720205.1:16839042-16846525[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.051 4.2 8.9 4.6 1 23 84 107 84 107 0.98

2 19 6.4 5.2e+02 2.3 4.1 1 23 188 210 188 210 0.96

3 19 0.0038 0.31 12.5 0.7 2 23 216 237 215 237 0.97

4 19 0.23 18 6.9 5.7 2 22 505 525 504 525 0.95

5 19 4.3 3.5e+02 2.8 1.0 1 23 621 643 621 643 0.82

6 19 0.74 61 5.2 0.3 2 23 778 799 777 799 0.96

7 19 6.7 5.4e+02 2.2 1.1 2 23 874 895 873 895 0.95

8 19 0.2 16 7.1 0.6 1 23 903 925 903 925 0.97

9 19 0.15 12 7.4 3.4 1 23 968 990 968 990 0.95

10 19 3.2e-05 0.0026 19.0 2.0 1 23 999 1021 999 1021 0.99

11 19 0.066 5.4 8.5 1.6 1 23 1103 1125 1103 1125 0.99

12 19 0.076 6.2 8.4 0.4 1 19 1181 1199 1181 1203 0.96

13 19 1 82 4.8 0.1 2 23 1210 1231 1209 1231 0.95

14 19 0.049 4 8.9 0.4 1 23 1295 1317 1295 1317 0.92

15 19 0.018 1.5 10.3 1.1 1 23 1323 1345 1323 1345 0.96

16 19 0.0084 0.68 11.4 2.6 1 23 1434 1456 1434 1456 0.97

17 19 0.00021 0.017 16.4 1.4 1 23 1462 1484 1462 1484 0.99

18 19 0.39 32 6.1 2.1 1 23 1575 1597 1575 1597 0.96

19 19 0.0035 0.29 12.6 3.7 1 23 1608 1630 1608 1630 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.051	4.2	8.9	4.6	1	23	84	107	84	107	0.98
2	19	6.4	5.2e+02	2.3	4.1	1	23	188	210	188	210	0.96
3	19	0.0038	0.31	12.5	0.7	2	23	216	237	215	237	0.97
4	19	0.23	18	6.9	5.7	2	22	505	525	504	525	0.95
5	19	4.3	3.5e+02	2.8	1.0	1	23	621	643	621	643	0.82
6	19	0.74	61	5.2	0.3	2	23	778	799	777	799	0.96
7	19	6.7	5.4e+02	2.2	1.1	2	23	874	895	873	895	0.95
8	19	0.2	16	7.1	0.6	1	23	903	925	903	925	0.97
9	19	0.15	12	7.4	3.4	1	23	968	990	968	990	0.95
10	19	3.2e-05	0.0026	19.0	2.0	1	23	999	1021	999	1021	0.99
11	19	0.066	5.4	8.5	1.6	1	23	1103	1125	1103	1125	0.99
12	19	0.076	6.2	8.4	0.4	1	19	1181	1199	1181	1203	0.96
13	19	1	82	4.8	0.1	2	23	1210	1231	1209	1231	0.95
14	19	0.049	4	8.9	0.4	1	23	1295	1317	1295	1317	0.92
15	19	0.018	1.5	10.3	1.1	1	23	1323	1345	1323	1345	0.96
16	19	0.0084	0.68	11.4	2.6	1	23	1434	1456	1434	1456	0.97
17	19	0.00021	0.017	16.4	1.4	1	23	1462	1484	1462	1484	0.99
18	19	0.39	32	6.1	2.1	1	23	1575	1597	1575	1597	0.96
19	19	0.0035	0.29	12.6	3.7	1	23	1608	1630	1608	1630	0.98

Sequence Information

Coding Sequence: ATGCTCCAGCAGATGTCCTCGCAGCCGAGCGCACAAGTCGGCGAGGTCGCGTGTATCGGACGCCCCTTCGAAGGTCGCTTGTATGGCGACGCCTCTTCGGAGGCCTCCTCCGACGCTGCAGAAGAACCCGACCTACCGCAGTGCAAAATAAGGCGAAACTACAACTGCGCAAAGTGCAAGTTTTATACGCAAAACCCGCGCGTGTATCTTTTACACGTTCGTGAAGTTCATTTTGAAAGATTCAAAATATACGTTTGCCCACACTGTGTTTACGCATCCCGGCATCATCAAAAACTTTTGAGACATTTGAAAATGGTACACGATAACCGGAATTCAGTAATCAAGTTGGAACCTGAACCTGTCGTGTTGCCCCCTGCCATGTCTAACAATGCAGAACGCCAAGAGCGAATAGAGGATCTCTTAGAAGAAGTGGAGGAGTGTGACGAGGGTGAAATGGACGCAGAAGATGGTCAAGTCGAATCCATGTACCGTTCAACTGATGTCGAAATGGACGTTGGCAGATCAACAACGGATGGATTACCAAAAAACAAGGGGGATTACTTTAACTGTGATAAATGCAACTACGTGACGCATATAAAAGCGAGATTCACAAAACACGTTAAATACCATTCAATTCCTAGAATCAAATGTAGCATTTGTGAATTTCGGACACCATACAAATGGAATCTGGACCGTCACATGAAGAACCACGGGGGCACCGGCAGCTTCAACTGCTGCATGTGCAACTTCACGGCGGACATAAAGCAAAGTCTGACGGCGCATGAAATGAATCACCACAACCGGCCGATGGACCAGTCGGTGGGGAGGCGCGGCCGCAACCGAGTGGGTGCTAGCGACGTGTTAGTCAGCGCGCCGGCTTCAGTCGTCCCCAAGGAGGACGAAGGGAGCGGCGACTCGCGTTCCTCGCATTCGGACATGATGGGTTTGCAGTACATAGAGAGGGATACGATAAGTAACAGCGACTCAAATGATGCGTCGActtccgaggtagctgccaagAAGGACGACTCGCAGTTGGCACAAAATGCGCAACATTCACCCAATGCTTCAACAGATGACGCCAAGAGTCAAAAACAGAGTAGAAAGATACCCAGACCGATACCGCAGCTCATACCGCTAAATGCGTCCACTCCGAACCAGGCCAAATCAGCCGGAGAACCACCGTCAAAgaaattcaaagaaaatccaTCCAACGAGTCAAACGACTCGAACTCTGACAGTAAACTAGATGCCTTACCAGCAGACATCACTGTGACACCGGTATCTAATACGCCtacaaaggaaattgtggcacgAAAAAAGAACGAATCATTCTTTGATAGATTAAAAGAACGAATACTTACAGAGACTGGCGAAGAAGGCTCACTTAATTGTAAAAATTGTGGTTTTGTCAGTAAATGTCTATCAGAACATTCGgttcatgaaaaaaattgtactgcACAGTTTAATAATTCCGCTAAGAATACGTTGTTACCGAATTTAAGTTCAACACGATGCCAACATTGTAGACACAGATGCAAATCTAGTGCAGACTTATATAACCATATGCAGACTTGTAGGAAGAACGAAAAGCGGGGTGATCAGCTAGTAGAAATGAAAAATCATGACAGCAATGAAGCTTCTTCTTCCAACAAAGATCGAGACGCGGAACCGCATCCTATGGAGAATGTCGTTTTCGTATGGAATAACATAAACGCAAATAATTTTGAAACTCCTCTCGGCATTAACATCAATGATGATTCGACTCTTCCAATCCTACACAAATCATTCGAAAATGAGATCGTTGATGACAACGAGAGCATGAACCTATCACCGAGCCAGGCTGTGGGCAAAAGAGTATTCAAATGCCCACACTGTCCGTTCTGGGCTTCGACAGCATCCAGATTCCATGTTCATATTGTAGGCCACTTAAATAAGAAACCATTTGAATGTTCACTCTGCAAATACAAGTCAAATTGGCGGTGGGACATCACAAAGCACATCAAACTAAAGTCTGCTAGAGATCCAGAACATAATGAAGCCAAAGTTTTAATGACCGATGAAACTGGAAGGAGAAACTATACAAAATATAGCAAGTTCCTCGCAATGCCCGTGTTAAATGAATATGGTGAAAATGAATTTCACTATGTCGATCAAAATGCTTCAGCTGATCCGTCTCTTGAAGTTCATGACTCGCTTCATGAAATTAATGATATGAACAGTTCGTACGAAATGCAGCCGTTGAACTTGCAGACTCAACATTTTGAGCAAAAATATGACTTGCTAGACGGAAGACTTATTGACGCCAAGAAACCTAAAAAAACgttatggaaatgtaaaaaatgcAATTACAAAGACCCATCTAAAGAAGCGTTGTTGGAACATGTTCGAGAGCACGCCAAAGCCGACGGTGCCCAGGGCAGTCACCCTAACAAGAAACTAGAGAATCTACCAGATCCAGCGGACTTAGCGTATCGCTGCGGACACTGCAATCAATTGTCCAATTGGAAACACGTTATACAGAGACATTGCCGATTGAAGCACGATGGCATCATTAAGGTCATAACGACTATCAAACCAAAACCAGAAACATCTACTCCGAATGAAGTAACTGGTGATACATGCACGAGATGCCCGTTCAAATCTACtgacaaaaaaatactcatGATGCATCTACAGCAACATCAGCCTTCCCCAGACTCTATATTCAAATGCTACTTCTGCCCCTTCTTTGTTAAAGACGAACAAGAATTAGTCCAACATTTATTGCTGCACGGAATTACAGAGCCAGAGGAATATATCGCAAAAGCTATGGGAAGCAGATCGCCCTTACCAGACCCCGTCATTGTACCGGGCCCGTCGGGCTCCTCAGTCCCGCCGGCTGGAGGATCCACTAAACGTCACAAATGTACGGAATGCCCCTACGAAACAAACAGCAAATCGCAGTACATGTATCATGAACAGTTTCATCGTGCCCCGAATGAAACTCGAGAGTACAAATGCCCGGAATGCAATTacagtgtttctaaaaggcatTTACTAAATCAGCATTTGCGAGTGCACGGAATTATTACGAAGAAATCTGAATCCGAGGCAGAATTAGAAGCGATGGTTACCGATCCTAACAAAACAGAAAAATCAGAAGATTTGTCAGTACTGGAGGAAATCCCTTACGTCTGGGTATCGGCCAAAAATGAATTCCACAAAATGTACAAGTGTCGATTCTGTTCTTATGTAAACTCGCAGCAGTGTAAAATACCAAATCACGAAAAGATTCACTGTATAGAAAATAGCGAAACGACTGTGTACAAGTGCTGGGAGTGTAAATTCACTTGTGACAACGCAGGAAGACTAGCCGAACATTCCAAAACCCATGGCGAAATCTACGGCCGAATATATTGCCCTGTGGAACCTGATGTCCCTGATGAAGAACAAATTGCTAAATTGCGTAAAGTAATCGAAGCTGAAAAACCAATCACTTCGGAAGAGATGCAAAAGGAAGAAATATCAGCACCTGAGAACAAGGAAGTAAAAATCTTATACTTTTGCCAGAAATGTCCATCAAGATTCTATACAGAAGACGATTTGACAGCTCACGACATAGGCCATAAAGAAAACTTTGCTACTAAATGTAAAAGTTGCGAATTTTCAGTATCTGAAGAAGAAGAGTTGGAAGCTCATGCGACTGTTCATACGGACGAGTaccacacaaaaacaaaaatgctaAAGTTTATACACAACATGCATCCTGCTCATACTCAACCTCGGCTGGAACTCGTCCATTGTCCAGCTACTTCTGAAATTACTTGGATTGTATCAAACAAAAACTATGATGAGTGTACTTTTAGGAGGTCAGGAGATACCAAACATGGACCTAGACAGTACCTTTGCAAAGAATGTCCAGCAAAATTCTTCAAAAGCTCTGCTCTCAGCTATCACCTGGGCCTACATGGAAGCGATGGCGAACACAAGTGCAAAAAATGTAGTTATGCTGTTAAGAACATAGGAAACTTAGCTAAGCACGAATTACTACATGAAAATGAGCATAAACAGTCTGGCGACTACGACTCTGGTGATGAcatagattacaaaaatataccaCTGTCAGGAACCGATTTGTTCCAAAGGAAAACTGAAGCTCAGAAGCGAGTTTTAACCGATAAAGATAAACTTGTAAAGCCTAATGACCATTTCCCACCAGTTCTACAAGCTGATCCACAATTTGGCTATCTTATGCATGGTAATCCTGAATTTATATATCCCACTTACTTAAAGAATGGAAGGCAGAAAGAAAAACGTTACAAGTGCCACAAGTGTCCCTCGGCTTTTGAAAAAAGAGAACAATATAAGATACATTTGTCATTACACGGATCCAAGCAAAGATACAAATGCGAATTATGTGACTACTCGGTAAAATATTACGCAAATTATGTCCAGCATATGAGAAAGCATCAAATGAACGACGAGGCTCAAGCGGAGAGGAAAAAAGGGAGCAATGGTTTCACAGAAACCGAGATCCAAGAAACTAAACAAGACGATAGCGGGGACAACATAAAGCTAGCAATTAAAACAATGCCGCGGGCTGCAGCCAAGAGCGACTTCCAACAATTTTCGATAAGCGATCAACAAACTCTTCGCCTGCTTCAAAGGAGACGTTCTATAAATAGCGCTGGAAAGGATCCAAACGCGAACGAGACAACGCCGCCTTCAAATCGAAAATTACACATGTGCCTTTTATGCCCGTACACGAACCAACGGCAGGACGCCTTGACGAACCATTATCGTAGACACGATGACACGGACGTGCTCAATGCTGGCACTCACAAATGCTCTTACTGTGACTTAGTAGTTGTTCAATCCCATTTCCTCCGGGAACATCTTAAAACTCATTTCAGCTATCAGAAAACGCTCACTGCGGAATGTTTTGTTGCCAACAAAGATGTGAGTTTTACTATAACCCAAATAGACGATGAGAACTTGTCTACAGATCTCAAGTTAGATATACGAAATAAGAACTACGCGTGTAACGATGATAAAAtgtatgtgaaaataaaaactggAGAACTTATGGTAGAGTAA
Protein Sequence: MLQQMSSQPSAQVGEVACIGRPFEGRLYGDASSEASSDAAEEPDLPQCKIRRNYNCAKCKFYTQNPRVYLLHVREVHFERFKIYVCPHCVYASRHHQKLLRHLKMVHDNRNSVIKLEPEPVVLPPAMSNNAERQERIEDLLEEVEECDEGEMDAEDGQVESMYRSTDVEMDVGRSTTDGLPKNKGDYFNCDKCNYVTHIKARFTKHVKYHSIPRIKCSICEFRTPYKWNLDRHMKNHGGTGSFNCCMCNFTADIKQSLTAHEMNHHNRPMDQSVGRRGRNRVGASDVLVSAPASVVPKEDEGSGDSRSSHSDMMGLQYIERDTISNSDSNDASTSEVAAKKDDSQLAQNAQHSPNASTDDAKSQKQSRKIPRPIPQLIPLNASTPNQAKSAGEPPSKKFKENPSNESNDSNSDSKLDALPADITVTPVSNTPTKEIVARKKNESFFDRLKERILTETGEEGSLNCKNCGFVSKCLSEHSVHEKNCTAQFNNSAKNTLLPNLSSTRCQHCRHRCKSSADLYNHMQTCRKNEKRGDQLVEMKNHDSNEASSSNKDRDAEPHPMENVVFVWNNINANNFETPLGININDDSTLPILHKSFENEIVDDNESMNLSPSQAVGKRVFKCPHCPFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNEAKVLMTDETGRRNYTKYSKFLAMPVLNEYGENEFHYVDQNASADPSLEVHDSLHEINDMNSSYEMQPLNLQTQHFEQKYDLLDGRLIDAKKPKKTLWKCKKCNYKDPSKEALLEHVREHAKADGAQGSHPNKKLENLPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGIIKVITTIKPKPETSTPNEVTGDTCTRCPFKSTDKKILMMHLQQHQPSPDSIFKCYFCPFFVKDEQELVQHLLLHGITEPEEYIAKAMGSRSPLPDPVIVPGPSGSSVPPAGGSTKRHKCTECPYETNSKSQYMYHEQFHRAPNETREYKCPECNYSVSKRHLLNQHLRVHGIITKKSESEAELEAMVTDPNKTEKSEDLSVLEEIPYVWVSAKNEFHKMYKCRFCSYVNSQQCKIPNHEKIHCIENSETTVYKCWECKFTCDNAGRLAEHSKTHGEIYGRIYCPVEPDVPDEEQIAKLRKVIEAEKPITSEEMQKEEISAPENKEVKILYFCQKCPSRFYTEDDLTAHDIGHKENFATKCKSCEFSVSEEEELEAHATVHTDEYHTKTKMLKFIHNMHPAHTQPRLELVHCPATSEITWIVSNKNYDECTFRRSGDTKHGPRQYLCKECPAKFFKSSALSYHLGLHGSDGEHKCKKCSYAVKNIGNLAKHELLHENEHKQSGDYDSGDDIDYKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKGSNGFTETEIQETKQDDSGDNIKLAIKTMPRAAAKSDFQQFSISDQQTLRLLQRRRSINSAGKDPNANETTPPSNRKLHMCLLCPYTNQRQDALTNHYRRHDDTDVLNAGTHKCSYCDLVVVQSHFLREHLKTHFSYQKTLTAECFVANKDVSFTITQIDDENLSTDLKLDIRNKNYACNDDKMYVKIKTGELMVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00720882;
90% Identity: iTF_00641024;
80% Identity: -