Rfor029539.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720233.1:1023271-1026040[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.011 0.92 11.0 0.1 2 23 161 182 160 182 0.94 2 12 4.2e-05 0.0034 18.6 0.8 1 23 188 211 188 211 0.97 3 12 0.0009 0.073 14.4 2.8 1 23 225 247 225 247 0.98 4 12 0.026 2.1 9.8 6.6 1 23 253 275 253 275 0.99 5 12 0.041 3.3 9.2 2.2 1 23 285 308 285 308 0.97 6 12 0.22 18 6.9 0.5 1 20 316 335 316 337 0.93 7 12 0.0078 0.63 11.5 3.1 1 23 523 545 523 546 0.96 8 12 0.091 7.4 8.1 0.6 1 21 554 574 554 575 0.91 9 12 0.48 39 5.9 2.9 3 23 584 604 582 604 0.96 10 12 0.00016 0.013 16.8 1.6 2 23 608 630 607 630 0.96 11 12 0.13 11 7.6 0.1 2 23 636 657 635 657 0.94 12 12 6.4e-05 0.0052 18.0 4.8 1 23 663 685 663 686 0.96
Sequence Information
- Coding Sequence
- ATGGAGCAACAGAAACAAGACGCCGAAAACTCATCAGAAGAAGATTCAGAAGAATCTTTGACTCAATCTGATTCCGAAGCAGATGATTCAAATGGATCGGTTCACTCTAAACCAGAATCTGATCATTTAAGAGATGAATCAAGTTTGAAACAAGAACCAGACCATTTTAAGCATGAATCACGTCACATAAAAGTTGATTCTAATATAAAGCGAGAATTGGGAGATGTGAAACAAGAAGCAGGCTTAAAACAGGAGCTTGATCCAGTAGAACCGGAAAAAGGGATGGATAGCATGTTTGCAAGTGTATGGGTAAAAGTGGAGATGCCAGAAGATGAAGATAATGAACCAGAATCGGAAGATGATGCTACTGATGTaAATTATGAACCTGAACATCCCACCAGAAGAAAACAAAGGCAAAGAAAACACGAAGATGGACCAGAGGGTGAGAAAAAGCCACGCAAAGTTCCAACTGACGTACTTAAATGTCCTCTCTGCGACTACACCACCGTTTACAAAACTGCCTTAATCATGCATAAGATTGGCCACAGTTCAGAAAAAAAGTACAGCTGCCCCGAATGTAACTATCGGTCGAAATATCAAAACGCTCTGACGCGACATATTAAAATACAACATCAAAAAGATGATACTCCATCTTCGCAGCCCGATACAATCTTTAATTGCGACCAATGTGATTATAAAACCAATTTCAAATGGAATTTGAAAGCCCATAAACGGAAACATAATATAGAGAAACAGTATAAATGTAGTCATTGTCCCTTCGAGACAGCGTATCGGCATAACTTTTTGAAACATAGCAGAACTCATCAGCCGAAAGATAAGCCTGTGACGTTCTATAAATGTGATAAATGCACTTTTGTGACTAAATTTGAGGGACATATTACTAGACATTTAGCTAAAATTCACAATGAAATCACTGATACTGCTTATAAGTGTGATTTGTGTGACTTTTCTACTAGAGTGAGATGGAGATTGAATATACACAAGACGAAAAGTAAACAGGAGAATGTATTGGCGTGTAGATATTGTAATTTCCAGACATATTTTATGTGCGAAAGTAAAAAGCATAAAGTTATACATTATGACGTAATGTACGGATATAAGAAtgttcaaaaagaaaattattcagAATCACACAACTCTCAACTTGACGCTAATACTGGGTTAAGTACTGAATACAATAATACcggctataaaaatattcaaaaagaaGATTATACTGAATCGCACAACTCGGAAGTTGATGCTGCAACAGGATTAAGATTAGATTATAATCTGAAAAACGAAACTGCAGATTATAGTGTGCCAGAATCACATAACTCAATAATTGAACCAACCACTGGAATGCATATTTCCCCAACTACTTCAAGTAAGGGAGAATACATGCAAAATAATCGAACAGACGATTATAATGAAATGGACAGCTATTATGAGCAAGAGGCTACTAATACGAGACAAAAAGAATACCAAAGGGACTACATTGTCGATCCAGACACTGTAGAATGGAAGAACATCAAAGTCTTAGTGTCTAACGATAAAGAACGGCCATTCCAATGCCTTGGATGCGACTACACGTCACGATTCAAAGCCGCTGTAAAGAGACACTATCAAAGACATCACACTGGCAGCAACAACAGACCATACGAATGTACAAACTGCGATTTCTCAACGAAAACTAAAGACAAAATAGCTCTACACAATAGACGAAGCAAATCCGACATCACATTATTCTGCAACATTTGTCAATTCACAACGATTTATAAATGTCAATTCGCTATGCATCAAAAAGGGCATTACGATAATAAATGCACTGAATGCGAATACAGTTCGAAGCGCAAATATGAGTTACAAAAACATTATATGGTAACGCATATGGGGAATGGTCTTAAATGCCAGTACTGTGATTATGTGGCAGCTAGGAAGGAGAGTATTTTGAGCCATGAGACGATTCACACAGGCATCAAACCGTTTAAATGTGAACATTGTGATTACATGGGCGTTAAGAGTTCTTTATTGAACAAACATATGCGAAGACATCACAGTAATTTGATGACTGGTGTAGTGGTCGTAAGTGAGAGTAAGATAGATTCTTTGAAGCAGCAATGTATCACAACCACTGCACAGATTAAAGACTTAACTGCTGCGGCGGAGTCTGCAGATTTTTCATAA
- Protein Sequence
- MEQQKQDAENSSEEDSEESLTQSDSEADDSNGSVHSKPESDHLRDESSLKQEPDHFKHESRHIKVDSNIKRELGDVKQEAGLKQELDPVEPEKGMDSMFASVWVKVEMPEDEDNEPESEDDATDVNYEPEHPTRRKQRQRKHEDGPEGEKKPRKVPTDVLKCPLCDYTTVYKTALIMHKIGHSSEKKYSCPECNYRSKYQNALTRHIKIQHQKDDTPSSQPDTIFNCDQCDYKTNFKWNLKAHKRKHNIEKQYKCSHCPFETAYRHNFLKHSRTHQPKDKPVTFYKCDKCTFVTKFEGHITRHLAKIHNEITDTAYKCDLCDFSTRVRWRLNIHKTKSKQENVLACRYCNFQTYFMCESKKHKVIHYDVMYGYKNVQKENYSESHNSQLDANTGLSTEYNNTGYKNIQKEDYTESHNSEVDAATGLRLDYNLKNETADYSVPESHNSIIEPTTGMHISPTTSSKGEYMQNNRTDDYNEMDSYYEQEATNTRQKEYQRDYIVDPDTVEWKNIKVLVSNDKERPFQCLGCDYTSRFKAAVKRHYQRHHTGSNNRPYECTNCDFSTKTKDKIALHNRRSKSDITLFCNICQFTTIYKCQFAMHQKGHYDNKCTECEYSSKRKYELQKHYMVTHMGNGLKCQYCDYVAARKESILSHETIHTGIKPFKCEHCDYMGVKSSLLNKHMRRHHSNLMTGVVVVSESKIDSLKQQCITTTAQIKDLTAAAESADFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00640862;
- 90% Identity
- -
- 80% Identity
- -