Esim015233.1
Basic Information
- Insect
- Elegia similella
- Gene Symbol
- -
- Assembly
- GCA_947532085.1
- Location
- OX383954.1:1307341-1310807[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.011 0.87 11.0 0.1 2 23 151 172 150 172 0.94 2 12 4.2e-05 0.0032 18.6 0.8 1 23 178 201 178 201 0.97 3 12 0.00091 0.07 14.4 2.8 1 23 215 237 215 237 0.98 4 12 0.026 2 9.9 6.6 1 23 243 265 243 265 0.99 5 12 0.042 3.2 9.2 2.2 1 23 275 298 275 298 0.97 6 12 0.14 11 7.5 0.5 1 20 306 325 306 327 0.93 7 12 0.0079 0.6 11.5 3.1 1 23 514 536 514 537 0.96 8 12 0.092 7 8.1 0.6 1 21 545 565 545 566 0.91 9 12 0.59 45 5.6 2.6 3 23 575 595 573 595 0.96 10 12 0.00016 0.012 16.8 1.6 2 23 599 621 598 621 0.96 11 12 0.13 10 7.6 0.1 2 23 627 648 626 648 0.94 12 12 6.5e-05 0.0049 18.1 4.8 1 23 654 676 654 677 0.96
Sequence Information
- Coding Sequence
- ATGGAGCAACAGAAAGAAGACGTCGAAAACTCATCAGAATCAGATTCTGAAGAATCTATTAATCAATCTGATTCAGAAGCAGAGGATTCAAATGGATCAGTTCACTCTAAACCAGAATCGGATCATTTAAAAGATGAATCAAGTCAATCAAAGCAAGAATCGAGTAACATAAATGTTGATACGGCTAATATAAAGCGGGAATTAAGAGATGTAAAGCAGGAGTCGGATCCAGCGGAAACAGAGAAAGGAATGGATAGTATGTTTGCAAGTGTGTGGGTAAAAGTGGAGATGCAGGAAGAAGAAGATAACGAACCAGAACCGGATGATGATGACACTGATGTAAATTATGAACCTAAACATCCCACCACCAGAAAAAAACAAAGGCAAAGAAAACACGAAGACGGCCAAGAGGGTGAGAAAAAACCGCGTAAAGTTCCAACTGACGTACTAAAATGCCCACTCTGTGACTACACCACCGTTTACAAAACTGCCTTAATTATGCATAAGATTGGGCACAGTTCAGAAAAGAAGTATAGCTGCCCCGAATGTAATTATCGGTCAAAATATCAAAACGCTCTAACGCGACATATTAAAATACAGCATCAAAAAGACGATACTCCAACATCACAGCCAGATAAAGTCTTTAATTGCGACCAGTGTGATTATAAAACCAACTTCAAATGGAATTTGAAAGCCCATAAGCGGAAACATAATATAGAGAAGCAGTATAAATGTAGTCACTGTCCTTTCGAGACAGCGTATCGGCATAACTTTTTGAAACATAGCAGAACTCATCAGCCGAAAGATAAGCCTGTGACGTTCTATAAATGTGATAAATGCACGTTCGTAACTAAGTTTGAGGGGCATATTACTAGACATTTAGCGAAAATCCACAATGAAGTGACCGATACGGCTTATAAGTGTGATATGTGTGACTTTTCTACACGAGTGAGATGGAGATTGAATATACACAAGACAAAAAGTAAACAACAGAATGTACTGGCGTGTAGATATTGTAATTTCCAGACCTATTTCATGTGTGAAAGTAAAAAGCATAAAGTTATACATTATGATGTAATGTACGGCTATAAGAATGTTCAAAAAGAAAATTACACTGAATCGCACAACTCTCAACTAGACGCTAGCACAGGGATGAGCACGGAATACAATCATACCGGCTATAATAATGTTCAAAAAGATAATTACAATGAATCACACAACTCGCAAGTTGATGCCGCAACCGGGTTAACATTAGATTACAATCTGAAAGACGAAACTTCAGATTATAGTGTGCCACAGCCACGTAACTCAGTAATTGAACCAACTACAGGAATGCATATTTCTCCAACTACTTCAAGCCGGGAAGAATACGTGCATAATAATCGCACAAATGACGATTATAGTGAAATTGACAATTATTACGACCAAGAGGCAACTAATACGAGACAAAAGGAATACCAAAGGGACTACGTAATCGATCCAGATACTGTAGAATGGAAGAATATCAAAGTGTTAGTGTCTAACGATAAAGAACGGCCGTTCCAGTGCCTTGGCTGTGACTATACGTCACGATTCAAAGCTGCTGTAAAGAGGCACTATCAAAGACACCACACTGGCAGCAACAACAGACCATACGAGTGTACAAACTGCGATTTCTCAACCAAAACTAAAGACAAAATCGCATTACACAACAGACGAAGCAAATCTGACGTCACATTATTCTGCAACATATGTCAATTCACCACAATTTATAAATGTCAATACGCTATGCATCAAAAAGGGCATTACGATAATAAATGCACTGAATGCGAATATAGTTCCAAACGCAAATATGAGTTACAGAAACATTATATGGTGACGCATATGGGGAATGGACTTAAATGTCAATACTGTGATTATGTAGCAGCTAGGAAAGAGAGTATTTTGAGTCATGAGACGATTCACACAGGAATCAAACCGTTTAAATGTGAACATTGTGATTACATGGGCGTAAAGAGTTCTTTATTGAACAAACACATGAGAAGACATCACAGTAATTTGATGACTGGTATTGTAGTAGTTAGTGAAAGTAAGATTGATTCGTTGAAGCAGCAATGTATTACAACTACTGCACAGATTAAAGACCTAACTGCTGCAGCGGAGTCTGCAGATTTTTCATAA
- Protein Sequence
- MEQQKEDVENSSESDSEESINQSDSEAEDSNGSVHSKPESDHLKDESSQSKQESSNINVDTANIKRELRDVKQESDPAETEKGMDSMFASVWVKVEMQEEEDNEPEPDDDDTDVNYEPKHPTTRKKQRQRKHEDGQEGEKKPRKVPTDVLKCPLCDYTTVYKTALIMHKIGHSSEKKYSCPECNYRSKYQNALTRHIKIQHQKDDTPTSQPDKVFNCDQCDYKTNFKWNLKAHKRKHNIEKQYKCSHCPFETAYRHNFLKHSRTHQPKDKPVTFYKCDKCTFVTKFEGHITRHLAKIHNEVTDTAYKCDMCDFSTRVRWRLNIHKTKSKQQNVLACRYCNFQTYFMCESKKHKVIHYDVMYGYKNVQKENYTESHNSQLDASTGMSTEYNHTGYNNVQKDNYNESHNSQVDAATGLTLDYNLKDETSDYSVPQPRNSVIEPTTGMHISPTTSSREEYVHNNRTNDDYSEIDNYYDQEATNTRQKEYQRDYVIDPDTVEWKNIKVLVSNDKERPFQCLGCDYTSRFKAAVKRHYQRHHTGSNNRPYECTNCDFSTKTKDKIALHNRRSKSDVTLFCNICQFTTIYKCQYAMHQKGHYDNKCTECEYSSKRKYELQKHYMVTHMGNGLKCQYCDYVAARKESILSHETIHTGIKPFKCEHCDYMGVKSSLLNKHMRRHHSNLMTGIVVVSESKIDSLKQQCITTTAQIKDLTAAAESADFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01302787;
- 90% Identity
- -
- 80% Identity
- -