Basic Information

Insect: Rhodophaea formosa
Gene Symbol: -
Assembly: GCA_963082605.1
Location: OY720231.1:9621114-9636668[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0084 0.69 11.4 2.0 2 23 299 321 298 321 0.92

2 14 1.3 1.1e+02 4.5 8.3 2 23 329 350 328 350 0.97

3 14 4.5 3.7e+02 2.8 5.7 1 23 354 376 354 376 0.94

4 14 0.0067 0.55 11.7 1.2 1 23 381 404 381 404 0.95

5 14 0.13 11 7.6 0.1 3 23 411 432 411 432 0.95

6 14 0.007 0.57 11.6 0.3 1 20 440 459 440 461 0.94

7 14 1 82 4.8 0.1 3 23 469 490 468 490 0.90

8 14 0.03 2.5 9.6 0.1 3 20 499 516 497 518 0.94

9 14 2.2 1.8e+02 3.8 0.1 2 23 524 546 524 546 0.92

10 14 0.00062 0.05 14.9 5.4 1 23 552 574 552 574 0.94

11 14 7.2e-06 0.00059 21.0 0.2 3 23 629 649 628 649 0.97

12 14 2.4e-05 0.002 19.4 3.1 1 23 655 677 655 677 0.98

13 14 6.9e-05 0.0056 17.9 1.4 1 19 683 701 683 705 0.93

14 14 0.00061 0.05 14.9 3.7 1 23 711 734 711 734 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0084	0.69	11.4	2.0	2	23	299	321	298	321	0.92
2	14	1.3	1.1e+02	4.5	8.3	2	23	329	350	328	350	0.97
3	14	4.5	3.7e+02	2.8	5.7	1	23	354	376	354	376	0.94
4	14	0.0067	0.55	11.7	1.2	1	23	381	404	381	404	0.95
5	14	0.13	11	7.6	0.1	3	23	411	432	411	432	0.95
6	14	0.007	0.57	11.6	0.3	1	20	440	459	440	461	0.94
7	14	1	82	4.8	0.1	3	23	469	490	468	490	0.90
8	14	0.03	2.5	9.6	0.1	3	20	499	516	497	518	0.94
9	14	2.2	1.8e+02	3.8	0.1	2	23	524	546	524	546	0.92
10	14	0.00062	0.05	14.9	5.4	1	23	552	574	552	574	0.94
11	14	7.2e-06	0.00059	21.0	0.2	3	23	629	649	628	649	0.97
12	14	2.4e-05	0.002	19.4	3.1	1	23	655	677	655	677	0.98
13	14	6.9e-05	0.0056	17.9	1.4	1	19	683	701	683	705	0.93
14	14	0.00061	0.05	14.9	3.7	1	23	711	734	711	734	0.97

Sequence Information

Coding Sequence: ATGTTAGTGGGTTTCATGGTGtTGCAAGATCACTTCCCGCAGCATCTGTGCATGTTCTGTCACGCGCTGCTGCTGAAGTTCTTGGGTTTCCGGGAGCGGTGCCAGAGGACACAGGCTATACTGCTTGATGCCGAGTTCCAGGGGAGATGTATCACACCGGAAACTTTGCGAGAAATATGCCACTGGAATCACAAACCAACATACACACCAATAACAATCATAGAAGCAAATGAATATGTCGAGTCAGCATTAGAAGACAAAGTTGATATCGAATTCAAACAGGAAAACATCCCTCTGCCAAATGATGTGTATTTCAAAGAAGATAAAAGTATAGAAAATGATGATTTGACCAATGATGTTGTAGAGCCTTTAGAGATATTTGCTGATGACTGTATAGACATTGAAGTTCCTAAACtcagtaaaaagaaaaacaaaagagtTTTGGACCGTGATATAGATGAAACTCCTAAAGTTAATTCTAGAAAGAAAttgaaaactaaagaaaaagataaaattgacattgatgataatgatgataacgaTGATGCAGTAGAACCTTTAGAGATATTTGCCGATGAATGTGTAGACATAGAGGTACCTAAAATTAATCCAAAAAGGAGAACTAAAAAAATCATAGACGACAGTGAATCCAGTGAAGATTACACTCCCAAagtaactaaaaagaaattcaaaaaggTTATAGATGATATAGACAAACCCAAAAGAAGAATAcgagtaaaaaaagaaagaaagccAAAAACCTCAAAATCCGCAGACGAAATCAAAAAAGTCGCAGACTCCCAAGAATTTGACGTCATATTCCTAACCAGAGACGAGCAATTGGAAGAAATAGAAGAGCGTAGGCAGGCAGCGTTGAAAGTCAAAAACAGCATCAAATGTAAATTCTGTGGCAAGAACTTCCAAACGCAAGATCGTTTAGACGCACATTTCAAATTCTACCACGACCCCAGCGTTGGGCATCTAGAGTGTGAGTTCTGTCAATGTAGGTTCAAAGCTAGGCACAAATTCTCGCATCATTTACGGATACATTTAGTAAGGTTCAGTTGTCGGAACTGCTCGTTCACGACGAAGAGGGATTGTACTTTGAAGAGGCATTTCGAGTGGCATCAGGGGAAGAGGCATATGTGCCAGTACTGCGAGAAGGATTTTGCGAAGATCTCGAGCTATCTTTCGCATGTGCGGCTGATTCACGCGGCTGAGCTGCCGTGGTGCGAGCTGTGTGGGGAATCCTTTATAGGCGAGAAAGGCGTCCAAGCTCACAAAAAGCTCCGCCACAGAGACATCAACATCTCCAAATTCGTCTGCACCACCTGCAAGACCAGCTTTATCAACGAACAAGCTCTAGACAGACATACGAGTCAGAATAGATGTGACTTGGCCAACTGCGTCCAATGTGGTGATGCGTTTGCCAGTCTGCAGTTGTTGAAGTATCATCTGGTGCAAAGGCATACTGCTGAAGGGCTGGTGACGGATTGTCAGGGCTGCGGAGTTAGGTTCCACAACACAGCGGCgttccagcgccatctagcggcGTGCGGCGCGAGCGCGGTGTGCGTGCAGTGCGGTGACAACTTCGAGGAAGAACGACAGTTGAAGGAACACGAAGCCAAAGCACACACAGGCACAGACTTATTCAAATGTGAAGAGTGCAACAAGACCTTCACGAATGCGTACTATTTCCGGGAGCATTGTAACTCTCACTTCAAGAACAAAGAAGTGGATCCACGGAGGAAACCCCGCGGCCGTGGCACCCGTCCGGTCGACCCGTCCCTCCGCAAGTGGCGAGTCGTCGGCGAGGAGGCTGCTGACGTAGTGATGGAACGAGAAGCCCCCAAGAAGAGCTTGGCCAAGAAAGGTGCTATGTGCGAAGTCTGCGGAAAAAGCTTCCAGAATGCCGGTCTGCTGAAGTACCACCAACGCATTCACTCCGGCGAGAGGCCGTTCCACTGTACACAGTGCACTAAGTCCTTCACCACCAACAGACTGCTAGAGGAGCACGTTCGCGTCCACACTGGTGAGCGCCCCTACAAATGTTCGCACTGCTCCAAAGCGTTCAAGACGCTTGCGGCGCTCAACAGGCACGATCTGGTCCACAACGGTCTACGCCGTCACGTCTGCCAACTGTGCGACAAGACGTTCCAGACATCCTCCTGTGCTAAAGTGCACATAAAAACTGTGCACATGAAGCTGCCCACGccgcccagggtgcgccggcgCAGGGGGCGGGACGAGTAG
Protein Sequence: MLVGFMVLQDHFPQHLCMFCHALLLKFLGFRERCQRTQAILLDAEFQGRCITPETLREICHWNHKPTYTPITIIEANEYVESALEDKVDIEFKQENIPLPNDVYFKEDKSIENDDLTNDVVEPLEIFADDCIDIEVPKLSKKKNKRVLDRDIDETPKVNSRKKLKTKEKDKIDIDDNDDNDDAVEPLEIFADECVDIEVPKINPKRRTKKIIDDSESSEDYTPKVTKKKFKKVIDDIDKPKRRIRVKKERKPKTSKSADEIKKVADSQEFDVIFLTRDEQLEEIEERRQAALKVKNSIKCKFCGKNFQTQDRLDAHFKFYHDPSVGHLECEFCQCRFKARHKFSHHLRIHLVRFSCRNCSFTTKRDCTLKRHFEWHQGKRHMCQYCEKDFAKISSYLSHVRLIHAAELPWCELCGESFIGEKGVQAHKKLRHRDINISKFVCTTCKTSFINEQALDRHTSQNRCDLANCVQCGDAFASLQLLKYHLVQRHTAEGLVTDCQGCGVRFHNTAAFQRHLAACGASAVCVQCGDNFEEERQLKEHEAKAHTGTDLFKCEECNKTFTNAYYFREHCNSHFKNKEVDPRRKPRGRGTRPVDPSLRKWRVVGEEAADVVMEREAPKKSLAKKGAMCEVCGKSFQNAGLLKYHQRIHSGERPFHCTQCTKSFTTNRLLEEHVRVHTGERPYKCSHCSKAFKTLAALNRHDLVHNGLRRHVCQLCDKTFQTSSCAKVHIKTVHMKLPTPPRVRRRRGRDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00640760;
90% Identity: iTF_00640760;
80% Identity: -