Esim010647.1
Basic Information
- Insect
- Elegia similella
- Gene Symbol
- -
- Assembly
- GCA_947532085.1
- Location
- OX383950.1:1474391-1497000[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0092 0.7 11.3 2.0 2 23 338 360 337 360 0.92 2 14 1.3 1e+02 4.5 8.1 2 23 368 389 367 389 0.97 3 14 4.9 3.8e+02 2.7 5.7 1 23 393 415 393 415 0.94 4 14 0.0074 0.56 11.6 1.2 1 23 420 443 420 443 0.95 5 14 0.14 11 7.5 0.1 3 23 450 471 450 471 0.95 6 14 0.0089 0.68 11.3 0.4 1 20 479 498 479 500 0.94 7 14 1.1 84 4.7 0.1 3 23 508 529 507 529 0.90 8 14 0.0088 0.67 11.3 0.3 3 20 538 555 536 557 0.94 9 14 0.059 4.5 8.8 0.3 2 23 563 585 563 585 0.92 10 14 0.00056 0.043 15.1 5.2 1 23 591 613 591 613 0.94 11 14 7.9e-06 0.0006 20.9 0.2 3 23 668 688 667 688 0.97 12 14 2.3e-06 0.00017 22.6 1.4 1 23 694 716 694 716 0.99 13 14 7.5e-05 0.0057 17.9 1.4 1 19 722 740 722 744 0.93 14 14 0.00067 0.051 14.9 3.7 1 23 750 773 750 773 0.97
Sequence Information
- Coding Sequence
- ATGTGGTCAGGTAGTATTAAAAATAACGATAATGCTGTAGCTTGTAGAGGTTGTCTCGCTATTGACGTTAAACTGTGTGGTATTCACGAACATAATTTGTCGGAAGCATTCGTGCAACTTATTGGGATTTCGCTTCAAGATCATTTCCCGCAGCACTTGTGTATTTTCTGCCATGCGTTGCTGATTAAATTTCTGGGATTCCGAGAGCAGTGCCGGAGATCACAAGAGATACTGGTTGATGCGGAGTATCGGGGGAGATGTATCACACCTGAAACTTTACGAGAAATAGGACACTGGAACCACAAACCAACATACACACCTGTAACAATCGTAGAAGCGAATGAATATGTCGAGTCAGCATTGGATGACAAAGTTAACATTAAATTCAAACAGGAAGATATCCCTCAGTTACCAAATGATGTGTATTTTAAAGAAGACAAAAGTATAGAAAATGATGAATTAGGCGATGATGATGTTGTGGAGCCTCTAGAGATATTTGCTGATGATTGTTTAGATATAGAAGTTCCTAAACTTAGTAAAAAGAAAAATAAAAGAGGCGTAGACACTGATATAGATGATGCTCCAAAAGTTAACACTAGAAAGAAATTAAAAAGTAAAGACAAAGATAAAAACGATATTGTGGAACATGATGATGATGATAATGATGATGTAGTAGAACCTTTAGAGATATTTGCCGATGACTGTATAGACATAGACATTCCTAAAATTAATCCAAAAAAGAAAACTAAGAAATTTATAGACGACAGTGAAGATTACACTCCCAAAGTAACTAAAAAGAAATTCAAAAGGCTTGTAGACGACGATATAGGCAAATCCAAAAAGAGAGTAAGAGTAAAAAAAGAACGAAAACCAAAAACTTCGAAATCCGCTGAAGAAATCAAAAAAGTCGCTGACTCACAAGAATTCGACGTCATATTCCTAACCAGAGAAGAGCAGCTAGAAGAGATAGAAGAGCGCAGACAAGCAGCATTGAAAGTGAAAAACAGCATCAAATGCAAATTCTGCGGCAAAAACTTCCAAACTCAAGACAGATTAGACGCTCACTTCAAATTTTATCATGACCCAAGCGTTGGACATTTAGTCTGCGAGTTCTGCCAATGTAGATTCAAGGCTAGACATAAATTCTCTCATCATTTACGGATACATTTAGTAAGATTCAGCTGTCGGAACTGCTCGTTTACAACTAAGAGAGATTGTACGTTGAAGAGGCATTTCGAGTGGCATCAGGGGAAGCGGCATATGTGCCAGTATTGTGAGAAGGATTTCGCGAAGATCTCGAGTTACTTATCGCATGTGAGGCTGATACATGCGGCTGAACTGCCGTGGTGCGAGCTATGTGGGGAATCCTTTATAGGCGAGAAAGGTGTACAAGCGCACAAAAAGCTACGTCACAGAGACATAAACATCTCCAAATTCGTCTGCACCAACTGCAAGACCAGCTTCATCAACGAACAAGCCCTGGACAGGCATAAAAGTCAAAACAGATGTGATTTCGCGAACTGCGTTCAATGTGGAGATGCGTTTGCCAGTTTACAGTTACTGAAGTACCATTTGGTGCAAAGGCATACTGCTGAAGGGTTGGTGACGGACTGTCAAGGCTGCGGAGTTAGATTCCACAACACATCGGCGTTTCAACGCCATCTATCGGCATGCGGCGCCAGCGCAGTTTGTGTACAATGCGGGGAACATTTCGAGGAAGAAAGGCAGCTGAAGGAACACGAAGCTAAAGCGCATACTGGGACGGATCTGTTCAAATGTGAAGAGTGCAACAAGTCGTTCACGAACGCGTACTACTTCCGGGAGCATTGCAATTCACACTTCAAGAACAAAGAGGTGGATCCGCGAAGGAAACCTCGCGGACGCGGCTCGCGTCCGGTGGACCCGTCGCTGCGCAAATGGCGAGTCGTCGGCGAGGAGGCGGCTGACGTGGTGATGGAACGAGAAGCTCCTAAGAAGAGCTTGGCCAAGAAAGGCGCCATGTGTGAAGTCTGCGGGAAAAGCTTCCAGAACGCTGGTCTTCTGAAGTACCACCAACGCATACATTCCGGCGAGAGACCGTTCCAGTGTACACAGTGCACCAAGTCATTCACGACGAACAGATTGTTAGAGGAACACGTTCGGGTGCACACTGGCGAGCGTCCGTACAAGTGTTCACACTGTTCCAAGGCATTCAAGACTCTAGCGGCGCTCAACAGACACGATCTGGTCCACAACGGTCTCCGTCGCCACGTGTGCCAGCTTTGCGACAAGACATTCCAGACGTCATCCTGCGCTAAAGTGCACATCAAGACGGTCCATATGAAGCTGCCCGCGCCGCCGAGGGTCCGCCGGCGCCGAGGCCGCGACGACTAG
- Protein Sequence
- MWSGSIKNNDNAVACRGCLAIDVKLCGIHEHNLSEAFVQLIGISLQDHFPQHLCIFCHALLIKFLGFREQCRRSQEILVDAEYRGRCITPETLREIGHWNHKPTYTPVTIVEANEYVESALDDKVNIKFKQEDIPQLPNDVYFKEDKSIENDELGDDDVVEPLEIFADDCLDIEVPKLSKKKNKRGVDTDIDDAPKVNTRKKLKSKDKDKNDIVEHDDDDNDDVVEPLEIFADDCIDIDIPKINPKKKTKKFIDDSEDYTPKVTKKKFKRLVDDDIGKSKKRVRVKKERKPKTSKSAEEIKKVADSQEFDVIFLTREEQLEEIEERRQAALKVKNSIKCKFCGKNFQTQDRLDAHFKFYHDPSVGHLVCEFCQCRFKARHKFSHHLRIHLVRFSCRNCSFTTKRDCTLKRHFEWHQGKRHMCQYCEKDFAKISSYLSHVRLIHAAELPWCELCGESFIGEKGVQAHKKLRHRDINISKFVCTNCKTSFINEQALDRHKSQNRCDFANCVQCGDAFASLQLLKYHLVQRHTAEGLVTDCQGCGVRFHNTSAFQRHLSACGASAVCVQCGEHFEEERQLKEHEAKAHTGTDLFKCEECNKSFTNAYYFREHCNSHFKNKEVDPRRKPRGRGSRPVDPSLRKWRVVGEEAADVVMEREAPKKSLAKKGAMCEVCGKSFQNAGLLKYHQRIHSGERPFQCTQCTKSFTTNRLLEEHVRVHTGERPYKCSHCSKAFKTLAALNRHDLVHNGLRRHVCQLCDKTFQTSSCAKVHIKTVHMKLPAPPRVRRRRGRDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01302704;
- 90% Identity
- iTF_01302704;
- 80% Identity
- -