Rfor026691.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720229.1:6082555-6084378[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0047 0.38 12.2 2.1 1 23 44 66 44 66 0.97 2 15 0.012 0.96 10.9 0.0 3 23 95 116 93 116 0.90 3 15 0.00061 0.049 15.0 0.6 2 23 137 159 136 159 0.95 4 15 0.0085 0.7 11.3 8.7 1 23 164 186 164 187 0.93 5 15 0.36 29 6.2 5.1 1 23 190 213 190 213 0.97 6 15 1.2 94 4.6 4.4 3 23 217 238 217 238 0.98 7 15 0.23 19 6.8 0.3 2 20 245 263 244 265 0.91 8 15 0.0014 0.11 13.8 0.8 1 23 311 334 311 334 0.95 9 15 0.00069 0.056 14.8 2.0 1 23 407 430 407 430 0.96 10 15 1.5e-05 0.0012 20.0 0.4 3 23 437 457 435 458 0.94 11 15 0.011 0.88 11.0 0.6 1 19 463 481 463 484 0.97 12 15 0.0022 0.18 13.2 0.8 3 23 493 514 492 514 0.94 13 15 0.00012 0.0097 17.2 1.9 1 23 518 541 518 541 0.97 14 15 0.007 0.57 11.6 0.9 3 23 549 569 547 569 0.96 15 15 0.021 1.7 10.1 2.2 1 23 575 597 575 597 0.97
Sequence Information
- Coding Sequence
- ATGAAAATTTTCATCTTTTCAGATGAAAATGGGCCGGCAAAAGTACTGAATGCTAACAGGCTGAGGCGACGTAACCTCCTCACGTTGTTCAACCACACCTCCTTGATTCCGTTCAAATGGCGCGGCAAATACATGTGCTTTTACTGCGGGCAAGACCTCCCCAACTGCACAGATCTGAGAAAACATACTAAGGCGCATGGACGATGTTCAGAAAAGGATAACTCCATAAGACAAGTCAAATCTGGAGAAGTTGAAGTCAAAATTGATGTATCAGACATCAATTGCGAAATTTGTGATAAGAATTtcgataatattgaaaatattattgatcATTTGACTGAAGAACATAGCTTACAATATGATAAAGATGTTGAGTTGTTAATGTCAGGCTATCGTTTGGTAGACCTCAAATGTTTGTATTGCGATGAGtcgtttacttatttaaataaattagtaactCACGTGAATTCAAGTCATCCTAACAACTGTTTTTTATGCCACGAATGCGACCAAAAGTTTAACAAGAAAAGAGATTTGCACTCTCACTTACGATTTCATCACAAAGAATTCAATTGTGCTAAGTGTTCACAACATTTTGACACGTTCGCTGAATTTCATACGCATAAACAGACCGCTCATATATCAGGTTGTAATTTATGCTTTGAAAAATTCTCTTCCGATAGGAAAAGACTGCATCACATGAAAACGGAACATGACTTGAATGCGATGATGCAATGTCAGTTTTGTAGTAAAACGTTAACAACTAAAATAGCGTTTTTAGTTCACGCTTCGAAGTGTAATATGAAACAAGATGCGAGTGAACAAGAGGGAGATATCGAAAAGAAATCGACTGTGATAGATATAAGAAAGAATATCGCCTGTGTGCTTAACATGTCAACGGCAGTGCCGTTCAAGTTTTTCTTACATGCTTACCGATGTTTCTATTGCGCTAAAGATTTTCAAGATTCCGATCTTTTAAAACAACATACGGTAATGGATCACCCGCACTGTGATCCGAAATTTCGGGGCTTGAAACTGCGTAACAGAAAAGATGGTGTGAGAATCAAAGTAGATATTTCGACGTTATCTTGCAAATTGTGTTACGAACCTATGTGTGATTTAGACGTTCTAATAGACCATTTGATTTCGGAGCATAAGGCGCAGTACGACAAGTCCGTTGACAATCATCTAGAGTCGTATAAACTGATTAAAGACAACTATCCGTGTCCGTATTGTCCAGAAGCTTGTAGATATTTCGGTAATCTGCTAAGACACGTCAGTAGTTGTCACGCGGAGAATAAGATCATTTGCGTATACTGCGGCATGTCTTTTCGGACGGATCCGAATCTGAGAGCTCATATAAATCGACATCACAAGCCGTATAATCACAAATGTAGGATATGCGACGTTGGTTTTCCTACCAGTGATATGCTGCAGTTACATTGCGGTAACGTCCATGGCACGAAAATTGCGATGTGTACTGTGTGCTCTGAGAAATTCTCGTCTAGAAACATGATGAGGAGGCACCTGATCAACGCGCATGGTGTAGGTCATAAGTGTAGCTACTGTGGCAAACTCTTCTCTAAGAACTCTGTAATGGAAGCACATGTTAGAAGGTTACATTTGAAGGAGAAGAATGTGAACTGCTCAGTTTGTTCGGAGAAGTTTTTTGACCAGACGAGACTGAGAATGCATATGGTGAAACATGTAGGGGAGAGGAACTTTCACTGTGACATTTGTAGCAAGAAGTTCTTGTGGAAGAAAAATTTGAGGGTCCATATGGCGATGCATGTTAAGAACGCTAATGCGCATATGATGACATAG
- Protein Sequence
- MKIFIFSDENGPAKVLNANRLRRRNLLTLFNHTSLIPFKWRGKYMCFYCGQDLPNCTDLRKHTKAHGRCSEKDNSIRQVKSGEVEVKIDVSDINCEICDKNFDNIENIIDHLTEEHSLQYDKDVELLMSGYRLVDLKCLYCDESFTYLNKLVTHVNSSHPNNCFLCHECDQKFNKKRDLHSHLRFHHKEFNCAKCSQHFDTFAEFHTHKQTAHISGCNLCFEKFSSDRKRLHHMKTEHDLNAMMQCQFCSKTLTTKIAFLVHASKCNMKQDASEQEGDIEKKSTVIDIRKNIACVLNMSTAVPFKFFLHAYRCFYCAKDFQDSDLLKQHTVMDHPHCDPKFRGLKLRNRKDGVRIKVDISTLSCKLCYEPMCDLDVLIDHLISEHKAQYDKSVDNHLESYKLIKDNYPCPYCPEACRYFGNLLRHVSSCHAENKIICVYCGMSFRTDPNLRAHINRHHKPYNHKCRICDVGFPTSDMLQLHCGNVHGTKIAMCTVCSEKFSSRNMMRRHLINAHGVGHKCSYCGKLFSKNSVMEAHVRRLHLKEKNVNCSVCSEKFFDQTRLRMHMVKHVGERNFHCDICSKKFLWKKNLRVHMAMHVKNANAHMMT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00640755; iTF_00013355; iTF_00012295;
- 90% Identity
- iTF_00640755;
- 80% Identity
- -