Basic Information

Insect: Acrobasis repandana
Gene Symbol: -
Assembly: GCA_963576875.1
Location: OY756240.1:6765429-6767258[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.005 0.44 12.0 0.2 1 23 44 66 44 66 0.95

2 16 0.73 63 5.2 0.0 2 23 94 116 93 116 0.87

3 16 0.012 1.1 10.8 2.1 2 23 137 159 136 159 0.95

4 16 0.00091 0.079 14.4 7.8 1 23 164 186 164 187 0.93

5 16 0.0026 0.22 12.9 4.2 1 23 191 214 191 214 0.97

6 16 0.037 3.2 9.3 3.3 3 23 218 239 218 239 0.99

7 16 0.41 36 6.0 0.2 2 20 246 264 245 266 0.90

8 16 0.0036 0.32 12.5 1.2 1 23 313 336 313 336 0.94

9 16 0.16 14 7.3 0.0 2 23 365 387 364 387 0.95

10 16 0.00044 0.039 15.3 2.1 1 23 409 432 409 432 0.96

11 16 1.5e-05 0.0013 20.0 0.4 3 23 439 459 437 460 0.94

12 16 0.0018 0.16 13.4 0.3 1 23 465 488 465 488 0.91

13 16 0.00065 0.056 14.8 1.1 2 23 494 516 493 516 0.94

14 16 0.00014 0.013 16.9 1.3 1 23 520 543 520 543 0.97

15 16 0.0051 0.44 12.0 0.5 3 23 551 571 549 571 0.96

16 16 0.02 1.8 10.1 2.2 1 23 577 599 577 599 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.005	0.44	12.0	0.2	1	23	44	66	44	66	0.95
2	16	0.73	63	5.2	0.0	2	23	94	116	93	116	0.87
3	16	0.012	1.1	10.8	2.1	2	23	137	159	136	159	0.95
4	16	0.00091	0.079	14.4	7.8	1	23	164	186	164	187	0.93
5	16	0.0026	0.22	12.9	4.2	1	23	191	214	191	214	0.97
6	16	0.037	3.2	9.3	3.3	3	23	218	239	218	239	0.99
7	16	0.41	36	6.0	0.2	2	20	246	264	245	266	0.90
8	16	0.0036	0.32	12.5	1.2	1	23	313	336	313	336	0.94
9	16	0.16	14	7.3	0.0	2	23	365	387	364	387	0.95
10	16	0.00044	0.039	15.3	2.1	1	23	409	432	409	432	0.96
11	16	1.5e-05	0.0013	20.0	0.4	3	23	439	459	437	460	0.94
12	16	0.0018	0.16	13.4	0.3	1	23	465	488	465	488	0.91
13	16	0.00065	0.056	14.8	1.1	2	23	494	516	493	516	0.94
14	16	0.00014	0.013	16.9	1.3	1	23	520	543	520	543	0.97
15	16	0.0051	0.44	12.0	0.5	3	23	551	571	549	571	0.96
16	16	0.02	1.8	10.1	2.2	1	23	577	599	577	599	0.97

Sequence Information

Coding Sequence: ATGAAAATTTTCATCTTTTCAGATGAGAATGGGCCGGCAAAAGTAGTGAATGCTAACAAGCTGAGAAGACGTAACCTACTCACCTTATTCAACAATACCTCCTTGATACCTTTCAAATGGAGAgggaaatatttatgtttttactgCGGTCAAGATGTCCCTGACTACGCAGATCTAAAGAAGCATACTAAAGCTCATGGACAGTGTAAAGAGAAAGAAAGATCTATTAGACTAGTCAAATCCGGCGACGAAGAAGTCAAAATCGATGTTTCAGATCTCGTTTGTGAAATTTGTGATAAAAACATTGATAATATTGAAGATATAAAAGACCATTTAACTGAGCAACACAATTTGCCTTATGACAAAGATGTGGAATTAACACTTTCGACGTATCGCCTCGTAGATTTGAAATGTTTACATTGTGAAGAatcttttaactattttaataaactCATTACTCATGTCAATTCGAGTCATCCGAATAACTGCTTCTTATGCCACAAATGCGACCAAAAGTTTAATAAGAAAAGAGATCTACACGCGCATCTGAGGGTTCATCACAGAACTGAATTTAGTTGTAGTAAATGCTCGCAAAGTTTCGACACGTTCGCTGATTTTCATAGACATAAACGAAGTGCGCATATCTCAGGTTGTAATCTATGCTTTCAAACATTCTCATCTGATAGTGAAAGACTGCATCATATGAAAACTGATCATGTATTAGATAAGATGATCCAATGTCAATTCTGTAGTAAAACTTTAAGTACCAAACTAGCATTCCTAGTTCACGCTTCAAAATGTAACATGAAGCAAGACATAACAGATTTAGAGGGGGAGTCTGTAGCAAAGAAATCAACTGTCATTGATATTAGGAATAATATAGCGTGTGTTTTGAATATGTCGACTGCAGTGCCCTTTAAGTTTTTCTTACATACGTTTAGATGTTTCTATTGTTCTAAAGATTTTCAAGATTCAGATGTACTTAAGCAACATACGGTTATGGAGCATCCACACTGTGATACGAAATTTCAAGGCCTAAGACTTCGCAATAGGAAAGATGGTGTCAGAATTAAAATAGATATATCAGCATTATCTTGTAAATTGTGTTACGAACCTATAAATGATTTAGAAACTTTAATTAATCATCTAATAACTGAACATAAAGCACAGTATGACAAGACCGTTGACAATTATTTGGAATCCTACAAACTGGTGAAAGACAACTATCCATGTCCATACTGTCCCGAAGTGTGTAGATATTTTGGTAATTTATTAAGACATGTCAGTAGTTGTCACGCGGAGAATAAGATTATTTGTGTATACTGTGGCATGTCCTTCAGAACAGACCCGAATCTAAGAGCCCATATAAATCGCCATCACAAACCTTACAATCACAAATGTACAATTTGCGAAGTAGGGTTTCCTACAAGCGATATGTTGCAGTTACACTATGGAAATGTCCATGGCACTAAAATATCCAGGTGTAATGTATGTTCAGAGAAGTTTTCTTCTAGAAACTTGATGAGAAGACATCAAATAAATGCACATGGGGTAGGACACAAATGTAACTACTGTGGGAAATTATTCGCGAAGAACTCGGTGATGGAAGCCCATGTGAGAAGGCTCCATCTGAAAGAGAAGAACGTAAACTGTTCGGTGTGTTCCGAAAAGTTTTTTGATCAGGCGCGGTTGAGAATGCATATGGTGAAACACGTTGGGGAGAGGAATTTCCATTGTGACATTTGCAGCAAAAAGTTTTTGTGGAAGAAGAATCTGAGGGTGCATATGGCGATGCATGTAAAGAATGCTAATGCTCAAATGATGATATAG
Protein Sequence: MKIFIFSDENGPAKVVNANKLRRRNLLTLFNNTSLIPFKWRGKYLCFYCGQDVPDYADLKKHTKAHGQCKEKERSIRLVKSGDEEVKIDVSDLVCEICDKNIDNIEDIKDHLTEQHNLPYDKDVELTLSTYRLVDLKCLHCEESFNYFNKLITHVNSSHPNNCFLCHKCDQKFNKKRDLHAHLRVHHRTEFSCSKCSQSFDTFADFHRHKRSAHISGCNLCFQTFSSDSERLHHMKTDHVLDKMIQCQFCSKTLSTKLAFLVHASKCNMKQDITDLEGESVAKKSTVIDIRNNIACVLNMSTAVPFKFFLHTFRCFYCSKDFQDSDVLKQHTVMEHPHCDTKFQGLRLRNRKDGVRIKIDISALSCKLCYEPINDLETLINHLITEHKAQYDKTVDNYLESYKLVKDNYPCPYCPEVCRYFGNLLRHVSSCHAENKIICVYCGMSFRTDPNLRAHINRHHKPYNHKCTICEVGFPTSDMLQLHYGNVHGTKISRCNVCSEKFSSRNLMRRHQINAHGVGHKCNYCGKLFAKNSVMEAHVRRLHLKEKNVNCSVCSEKFFDQARLRMHMVKHVGERNFHCDICSKKFLWKKNLRVHMAMHVKNANAQMMI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01302674;
90% Identity: iTF_00012295;
80% Identity: -