Rfor027610.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720230.1:1871455-1874450[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.9 1.6e+02 3.9 0.3 2 17 71 86 70 87 0.87 2 19 0.039 3.1 9.3 8.0 1 23 165 188 165 188 0.97 3 19 5e-05 0.004 18.4 1.0 1 23 197 220 197 220 0.96 4 19 0.092 7.5 8.1 0.4 2 23 233 255 233 255 0.97 5 19 9.6e-05 0.0078 17.5 0.8 1 23 264 287 264 287 0.97 6 19 4.7e-05 0.0038 18.5 1.3 1 23 299 322 299 322 0.96 7 19 0.00016 0.013 16.8 0.6 2 23 346 368 345 368 0.97 8 19 0.0042 0.34 12.3 1.2 2 23 378 400 377 400 0.96 9 19 0.11 8.8 7.9 1.9 3 20 408 425 406 430 0.88 10 19 0.00021 0.017 16.4 0.0 2 23 432 454 432 454 0.96 11 19 0.0014 0.11 13.8 1.2 3 23 464 485 463 485 0.97 12 19 0.0012 0.1 14.0 2.7 1 23 490 513 490 513 0.94 13 19 0.00033 0.027 15.8 2.6 2 23 525 547 524 547 0.97 14 19 0.017 1.4 10.4 4.1 1 23 572 595 572 596 0.93 15 19 1.3 1e+02 4.5 0.1 2 23 602 623 601 623 0.89 16 19 0.028 2.2 9.7 2.7 2 23 628 649 628 649 0.98 17 19 5 4.1e+02 2.6 2.4 3 23 657 679 655 679 0.91 18 19 0.018 1.5 10.3 0.2 1 23 715 737 715 737 0.97 19 19 0.23 18 6.9 2.0 1 23 743 766 743 766 0.96
Sequence Information
- Coding Sequence
- ATGGTAACGGCTTTCAATACACAGAACAACAAAGTTCACCGCTACCTTTTCAAAGATGTCATTGTCTACCATCGATATAATGAACTGTCGACGCAAGTACCTTTGATATGGTGCACTGTCGATGTAGCATCCTTCGTGGGGCGACCTATCGCTGCGGCGCACCTTCGATATCGTGAGTCGATACGCAATACCATCGACATGCTGAACTGTCGATGCAGCAACTGTCGATATGAGTTCGCCGACAATGCAGGCCTAATGGTGGAAGGGCCGCAAAGTGAGGACAGCCAAGAGCCAGCCATTAAAATCGAACCCCAGAACCATGAGGCCGTCCTACTCACCTTCGAGAGCGTCGTCAACAAAGCCCTGCTCGACTACAGCCAGAACATTGAATACAACGGGGACGAAGACCTAAAACCAGTTATGGGACTAAGCGAAGGAGACCATTCAGTCTTCGGATACAGTCCAGGCCTCCCGATGCAGACTGCACCCACCCACGTCTGCAAGGTCTGCCATCTAGTCTTTCAATCGCACAAAACTCTACGCATGCACCAGAAACGGAAGCACAAAGCGTATAGGAAATACTTCAAGCACATTTGTGATTACTGCGGAATGTCATACGAACAAAAGAACAGTCTAGTCGCTCATATTAAGAGGAAACATGGCCCGGATGCCACTCCGGATGATAGGGAAGAACGGACTTGTGAAGTGTGTGCTCTAGTCTTCAAAGGGATTATGCGGTTACGGATGCATATGAGACGGAAACATGGCTCGTTCGAAGACTCCTTCAAGTATAGCTGTAGTGAATGCGGATTGACTTATGATAAGCAGAGAAGTCTTATAGTCCATCAGCAACGGAAACATTCAAGAGTTCCAAAACCAGTACTGAATCAATGGTTCAACTGTCCGTTCTgtcctaaaatatttactagaaGAGAAACGTATGCAAGACATGTGCAAAGAAAGCATAAAGTTTCTGACGAAGATGATATAAAGGAAGAAGTTAGTGATATGAAGAACGAAGAGACTGGAGAGATTACTTGTAAAGAATGCCCTTTGGTTTTTTCGTCTATTAACTTCTTGAAACTACATATGAGGAGAAGGCATAACGCTCTTAAAGAGGACTTTAGACTTAAATGTAGGATCTGTAGTTTATCGTACGATAAGATTGAAAGCCTCAAAAGGCACGTAAGAAGGAAACATAATATGGGCGACTTTTCGCATTGCGAAGTGTGCAATAAACAGTTTGATAATAGGGAAGCTTATTTGAACCATTCTCACGTGAAAGCTCATGCAGAATGCGCTATATGTGGGCTTATTTTCGCTTCAGAAGGGAATTTAGGCAAGCATATGAGGTTAACGCACAAAATTGATATGCCTAAGCATGTGTTCTGCAGTCTGTGCAACGAAGGGTTCTTTGACAAACGACAGTTGAAGTCGCATTTAATGAAGGTACATTTAAAAGTGTCCTACACTTGTGTTTTTTGCAAGAAAGTGTTCAAAGCGAAGGAGAGTTATCGGAGACACATTTTGTTTAAGCATCCAGATAATAATCCAATGAAGAGCCAAGAGCAGAAGTGCGAACACTGTTCGGCTACATTCCCTGACGAGTTTGAGCTGTGTCGTCATATCAATACGGAGCATCGTGTAGAAGATAAGGAAACAAATGACGATTTAGTTCTAGTCAAAAAGGAAGAAGATGGTACGAAAGATTCATTCCATTGCATGAAATGCCCGGAAACATATCCGACTTGGGAGCAACTGCGGTTACATCACgaacaaaatcatcatttgcCCGAAGAAACTCAATGTCAAATGTGTGGAGAAATGGTCCCAGGGAACGCTCTGAAGAAGCACATCAAAAACGTTCACGTAGAGGAGCCACAGTGTAAATACTGTGAGTTCAAAACGAATAACCGGACTAGTATGACACAACATATCTTGAGGCACAAAAATGTGACTACGTTACACTGTGACTACACAGGTTGCAGATACAAAACGTATTACGAAGGTGCTATGCAGAAGCATAAGAGAAAGCACGCTGAGATCGGAGTGAAGTTGCAATGTACGAAGTGTCCGTTCCAAACGATGAATAAGTATATATTGAAATATCATGAAGAAGCACATATGACTGGCAAGAAGAGATATTCGTGTGATCAATGTGACTATGCAACTATATTACCAGCGAACTTGGTCCAGCATAAGTATAAGCATTCCGCAGAGAAACGGTTCAAGTGTGAAGTCTGTCCGTTTGCGACTAAGTACAACACGTCTCTGCGTTTCCACGTGAAAAAGAAGCACTGTGATCTCCCGTCGCTcagttga
- Protein Sequence
- MVTAFNTQNNKVHRYLFKDVIVYHRYNELSTQVPLIWCTVDVASFVGRPIAAAHLRYRESIRNTIDMLNCRCSNCRYEFADNAGLMVEGPQSEDSQEPAIKIEPQNHEAVLLTFESVVNKALLDYSQNIEYNGDEDLKPVMGLSEGDHSVFGYSPGLPMQTAPTHVCKVCHLVFQSHKTLRMHQKRKHKAYRKYFKHICDYCGMSYEQKNSLVAHIKRKHGPDATPDDREERTCEVCALVFKGIMRLRMHMRRKHGSFEDSFKYSCSECGLTYDKQRSLIVHQQRKHSRVPKPVLNQWFNCPFCPKIFTRRETYARHVQRKHKVSDEDDIKEEVSDMKNEETGEITCKECPLVFSSINFLKLHMRRRHNALKEDFRLKCRICSLSYDKIESLKRHVRRKHNMGDFSHCEVCNKQFDNREAYLNHSHVKAHAECAICGLIFASEGNLGKHMRLTHKIDMPKHVFCSLCNEGFFDKRQLKSHLMKVHLKVSYTCVFCKKVFKAKESYRRHILFKHPDNNPMKSQEQKCEHCSATFPDEFELCRHINTEHRVEDKETNDDLVLVKKEEDGTKDSFHCMKCPETYPTWEQLRLHHEQNHHLPEETQCQMCGEMVPGNALKKHIKNVHVEEPQCKYCEFKTNNRTSMTQHILRHKNVTTLHCDYTGCRYKTYYEGAMQKHKRKHAEIGVKLQCTKCPFQTMNKYILKYHEEAHMTGKKRYSCDQCDYATILPANLVQHKYKHSAEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00073068;
- 90% Identity
- iTF_00640728;
- 80% Identity
- -