Esim001071.1
Basic Information
- Insect
- Elegia similella
- Gene Symbol
- -
- Assembly
- GCA_947532085.1
- Location
- OX383951.1:2475880-2479971[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.041 3.1 9.2 8.0 1 23 183 206 183 206 0.97 2 18 5.3e-05 0.004 18.3 1.0 1 23 215 238 215 238 0.96 3 18 0.047 3.5 9.1 0.5 2 23 251 273 251 273 0.97 4 18 0.00012 0.0089 17.2 0.8 1 23 282 305 282 305 0.97 5 18 5e-05 0.0038 18.4 1.3 1 23 317 340 317 340 0.96 6 18 0.00015 0.012 16.9 0.6 2 23 364 386 363 386 0.97 7 18 0.0044 0.34 12.3 1.2 2 23 396 418 395 418 0.96 8 18 0.11 8.7 7.8 1.9 3 20 426 443 424 448 0.88 9 18 0.00017 0.013 16.7 0.2 2 23 450 472 450 472 0.96 10 18 0.0017 0.13 13.6 1.3 3 23 482 503 481 503 0.97 11 18 0.0013 0.099 14.0 2.7 1 23 508 531 508 531 0.94 12 18 0.00055 0.042 15.1 2.3 2 23 543 565 542 565 0.97 13 18 0.011 0.83 11.1 3.4 1 23 590 613 590 614 0.93 14 18 1.3 98 4.5 0.1 2 23 620 641 619 641 0.89 15 18 0.029 2.2 9.7 2.7 2 23 646 667 646 667 0.98 16 18 5.3 4.1e+02 2.6 2.5 3 23 675 697 673 697 0.91 17 18 0.019 1.5 10.3 0.2 1 23 733 755 733 755 0.97 18 18 0.24 18 6.8 2.0 1 23 761 784 761 784 0.96
Sequence Information
- Coding Sequence
- ATGTCAATAAAGAAAGAGGACGACGAATTCAAAGTCAAACTAGAAGGTGACATCACTATCAAAGAGGAGAGAAAAGATCCAACCTCATTCTTGCCAGAAGAACCGATGACATATGAAATTAAGAAGAAGAAGAAAAAGAAAAAGCGGAATAAAGAACAGGACCCGTTCAAGGACTTGGTGGACCTAACGACCCATGTGAAAAGTGATGAAGGACCCAACATGGAGATGCAGCTCGATCCAGAGGTCAATATAAAAGTGGAGAATATTGAAGTAGAATTAGATTTTAATGATTTTGCTGACAATGCCGGCTTAATGGTAGAGGGCCCGCAGAGTGAAGATAGTCAAGAACCAGCCATCAAAATCGAACCCCAGAACCACGAGGCCGTCCTGCTAACCTTCGAGAGTGTAGTCAACAAAGCCCTACTTGACTACAGCCAGAACACCGAATACAATGAGGAAGACCTAAAACCGTTCATGGGGCTAAGCGAGACAGACCATTCAGTCTTCGGATATTCTCCAGGTATCACCATGAAGACTGCACCAACACATGTGTGCAAGGTCTGCCACCTAGTCTTTCAGTCGCACAAAACTCTACGCATGCACCAGAAGCGGAAGCACAAGGCTTATAGAAAATACTTCAAGCACATTTGTGATTACTGTGGGATGTCCTACGAACAAAAGAACAGTCTAGTCGCTCATATTAAAAGGAAACACGGACCTGATGCCACTCCGGATGATAGAGAAGAAAGGACTTGTGAAGTGTGTGCTCTAGTCTTCAAAGGAATTACTCGGTTACGGATGCACATGAGACGGAAACATGGTTCGTTCGAAGACTCCTTCAAGTATAGTTGTAATGAGTGCGGACTTACTTATGATAAGCAGAGAAGTCTCGTAGTCCACCAACAACGGAAACATTCAAGAGTTCCAAAACCCATATTGAATCAGTGGTTCAACTGCCCGTTCTGTCCTAAAATATTTACAAGACGCGAAACGTATGCTAGGCATGTGCAAAGAAAACATAAGGTTTCCGAGGAAGATGATATAAAAGATGAGATCGTTGATATGAAGAATGAAGAGACTGGAGAGATTACTTGTAAAGAATGCCCTTTGGTCTTTTCGTCTGTCAACTTCTTGAAACTACATATGAGGAGAAGGCATAACGCTCTTAAAGAGGACTTTAGACTTAAATGTAGAATCTGTAGTTTATCGTACGATAAGATAGAGAGCCTTAAAAGGCACGTAAGAAGAAAACACAGTAAAGGCGACTTTTCGCACTGTGAAGTATGCAATAAACAATTTGATAATAGAGAAGCTTATTTAAACCATTCTCATGTAAAAGCTCACGCAGAATGTGCAATATGCGGGCATATTTTCGCTTCAGAAGGGAATTTAGGCAAGCATATGAGGTTAACGCACAAAATTGATGCTCCTAAGCATGTGTTCTGCAGTCTATGCAACGAAGGCTTCTTTGACAAACGACAGTTGAAGTCCCATTTAATGAAAGATCATTTAAAAGTGTCATACACTTGTGTATTTTGCAAGAAAGTCTTCAAAGCTAAAGAGAGTTATCGAAGGCATATTTTATTCAAGCACCCGAATAATAATCCGTTGAATAACCAAGAACAGAAGTGCGAACACTGTTCAGCAACGTTCCCTGATGAATTTGAGCTGTGTCGCCATATTAATATGGAACATCGTGCTGATGATAAAGAAACTAATGATGATTTAGTCTTAGTTAAGAAGGAAGAAGATGGCACAAAGGATTCTTTCCACTGCATGAAATGCCCGGAAACGTATCCTACTTGGGAGCAACTGAGGTTACATCACGAGCAAATCCATCATTTGCCCGAAGAAACTCAATGCCAAGTGTGCGGAGAAATGGTCCCTGGAAACGCTCTAAAGAAGCACATTAAAAACGTCCACGTACAAGAGCCACAGTGTAAATACTGTGAGTTCAAAACGAATAATCGGACGAGCATGACACAGCATATATTGAGGCACAAAAATGTAACTACATTACACTGTGACTACACTGGTTGTAGATACAAGACTTACTACGAAGGTGCTATGCAGAAACATAAGAGAAAACACGCTGAGATCGGAGTGAAGTTGCAATGTACGAAGTGTCCGTTCCAAACGATGAATAAATATATTTTGAAATATCACGAGGAAGCTCATATGACTGGGAAGAAGAGATATTCGTGTGATCAGTGTGATTATGCTACTATATTGCCAGCGAATTTAGTACAGCATAAGTACAAGCACTCCGCTGAGAAGCGGTTCAAATGTGAGGTCTGTCCGTTTGCAACTAAGTACAATACGTCTCTTCGGTTTCACGTCAAAAAGAAGCACTGTGATCTCCCGTCGCTCAGTTGA
- Protein Sequence
- MSIKKEDDEFKVKLEGDITIKEERKDPTSFLPEEPMTYEIKKKKKKKKRNKEQDPFKDLVDLTTHVKSDEGPNMEMQLDPEVNIKVENIEVELDFNDFADNAGLMVEGPQSEDSQEPAIKIEPQNHEAVLLTFESVVNKALLDYSQNTEYNEEDLKPFMGLSETDHSVFGYSPGITMKTAPTHVCKVCHLVFQSHKTLRMHQKRKHKAYRKYFKHICDYCGMSYEQKNSLVAHIKRKHGPDATPDDREERTCEVCALVFKGITRLRMHMRRKHGSFEDSFKYSCNECGLTYDKQRSLVVHQQRKHSRVPKPILNQWFNCPFCPKIFTRRETYARHVQRKHKVSEEDDIKDEIVDMKNEETGEITCKECPLVFSSVNFLKLHMRRRHNALKEDFRLKCRICSLSYDKIESLKRHVRRKHSKGDFSHCEVCNKQFDNREAYLNHSHVKAHAECAICGHIFASEGNLGKHMRLTHKIDAPKHVFCSLCNEGFFDKRQLKSHLMKDHLKVSYTCVFCKKVFKAKESYRRHILFKHPNNNPLNNQEQKCEHCSATFPDEFELCRHINMEHRADDKETNDDLVLVKKEEDGTKDSFHCMKCPETYPTWEQLRLHHEQIHHLPEETQCQVCGEMVPGNALKKHIKNVHVQEPQCKYCEFKTNNRTSMTQHILRHKNVTTLHCDYTGCRYKTYYEGAMQKHKRKHAEIGVKLQCTKCPFQTMNKYILKYHEEAHMTGKKRYSCDQCDYATILPANLVQHKYKHSAEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00073068;
- 90% Identity
- iTF_01302632;
- 80% Identity
- -