Rfor005150.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- Hr39
- Assembly
- GCA_963082605.1
- Location
- OY720207.1:5038804-5052853[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.1 1.7e+03 -1.0 1.5 89 201 52 172 5 184 0.52 2 4 2 3.4e+04 -6.5 10.0 80 173 226 318 160 364 0.46 3 4 6.5e-08 0.0011 19.4 0.1 1 20 443 462 443 468 0.91 4 4 2.8e-66 4.7e-62 211.6 0.0 151 408 496 762 467 762 0.85
Sequence Information
- Coding Sequence
- ATGTCGAGTGAGGCAGACGCGGTGAAGGTGGAAGGAGTCCACGTTTCAGTGACCACTATCAGCATGACGGGACCTGAGACGAGTAATGTTCAATTCTCGTACAGTTCGAGTGGCGTTCGCATCAGTGTGTCTTCAGATCCACACGATGAAGACTCCACTGATGCTGAAATCTCCAAGATAGACTTCAATCAACATCAACATGAgGTGAACATGCGCAACAAAAAGAAGCGCTCGTCTAGCGGCACCCAGTGCGACAGCCAGAGCAACGACAGAGAGCGACCGATGTCTTGGGAAGGCGAGCTGTCTGACTCCGAAATGGTTATCGATACTAGTGTCAATAACGATGAGAACAGCAGCTCCTTAGACCTCCAATCATCGCGGGATTCCATCGACACGCTTCGCAATGTGACCATAAAGACGGAGCCTTTGAAGACAGAGGCCTTCCAATGCGTGGACGATCAGAGAGTGCTGGACCTGAAATATACGGCGCCGTTACAGCCGCATCAGAGAAGCCATAGCATGAACAGGATATCGGTTCTTACGGACAACTCTTCCCTCTCACTCGCGCGGCGGCCGACGTCTCCCACGAACAGTGCCAAATCCCTCGGCCTCAACGATCAGAACACGGCGCCGATGATGCCGCAGACCTCTTTGGGTGAAGTCCAGAACTTGACCATAAAGAAAGAGACGCAGCTGTCAGAACTAAAATGCGAGCCCTCAGTGGGTATGGAGAAGTTACTTGGCGCGCTACACGGCTCCCCACTGCTGGGCCGCCTTCCCAGAGTGCAATCCAGTGCCAGTACAGACTCCGCGGTACATTCCATGTACACACACAGTGTGTACAGCAGTCCTTCAGCTAGTCCGCGGGCATCCCGGCACTACACGCCGTCGTTGTCCCGCAACAACAGCGATGCGTCCCATTCCTCTTGTTACTCGTATAGCTCGGAATTTTCGCCTACACATTCTCCAGTACAGGGCCGACATCCACACGTGGTATACCGTGAAGCAGCAGCGCCTATATTCCCCGCGTCACCGGCACATGATGAGGACGCCGACACCACGGACGAAAGACTACATCACCACCAGGGTATCAGCAGACAACAACTTATCAACAGCCCATGCCCTATCTGCGGAGACAAGATCAGCGGTTTCCACTACGGCATATTCTCGTGCGAGTCCTGCAAGGGCTTCTTCAAGCGCACCGTGCAGAACCGCAAGAACTACATGTGTTTGAGAGGAGGGAACTGTCCGGTGACCGTCGCTACGCGGAAGAAGTGTCCGGCGTGCAGATTTGATAAGTGCCTCGGGTGTGGGATGAAGCTCGAAGCGATCCGCGAGGATCGGACGCGAGGAGGCCGCTCAACATACCAGTGCTCGTACTCGCTGTCCGGCGCCTCGTCCACGGGCTCGCTGCTGTCCGCGCACGTCCCCACCACGCTGCGGCACGCCTCCTCGCTCACTTGTGTCAATGGTCCAGGATCATACACAAACAGCAGAGGAGAGTCTAGTAACAGTCGACTAACGCCAGACATACCGCCGTTATTACAGGAAATAATGGAAGTGGAACACCTCTGGCAGTACAACGAGTCTGAACTCAATCGACTTGGAAAATCCACTGGTAGTCCGTCCGCAAACCCACTGTTAGCAGCCAGTGGCATCACCGCGCAAAACTCAAGTCCCGACTTCTTGGCAGACCTGTGTAACATCGCAGACCacagattatataaaatagtcAAGTGGTGCAAGAGTCTCCCGCTTTTCAAGAACATTTCCATCGACGACCAAATCTGCTTGCTGATCAACAGCTGGTGTGAGTTGTTGGTGTTGTCATGCTGTTACCGCGGCGTGAGCACGCCTGGGGAAGTACGAGTGGGGGGCGGGAGGGGCATCACTCTCTCACAAAGTGCCAAGCTGGGATTGACGCCTTGTATAGAGAGAATGCTAAGCTTCACCGACCACTTGAGAAGATTGCGAGTGGACCGATACGAATACGTCGCCTTGAAAGTCATCGTACTGCTCACTTCAGATGCGCCAGAACTACGCGAAGCGGAGAAAGTGCGAGCATCCCAAGAAAAAGCGCTAGCAGCGCTTCAAGCGTACACCACCACGCACTCACCCGAAACTCCTGCCAAGTTCGGCGAGTTGCTGCTTCGTATCCCCGAGCTGCAGCGGACTTGTCAATTCTTCATGCAAGTCGGCAAAGAAATGCTCAACCCAGCCAACAAAGGAAAGGACGGCGACGGGCCAAGCTTCAATCTCCTCATGGAACTACTCCGCGGTGACCACTGA
- Protein Sequence
- MSSEADAVKVEGVHVSVTTISMTGPETSNVQFSYSSSGVRISVSSDPHDEDSTDAEISKIDFNQHQHEVNMRNKKKRSSSGTQCDSQSNDRERPMSWEGELSDSEMVIDTSVNNDENSSSLDLQSSRDSIDTLRNVTIKTEPLKTEAFQCVDDQRVLDLKYTAPLQPHQRSHSMNRISVLTDNSSLSLARRPTSPTNSAKSLGLNDQNTAPMMPQTSLGEVQNLTIKKETQLSELKCEPSVGMEKLLGALHGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRASRHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQGRHPHVVYREAAAPIFPASPAHDEDADTTDERLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVATRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSYSLSGASSTGSLLSAHVPTTLRHASSLTCVNGPGSYTNSRGESSNSRLTPDIPPLLQEIMEVEHLWQYNESELNRLGKSTGSPSANPLLAASGITAQNSSPDFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVSTPGEVRVGGGRGITLSQSAKLGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPELREAEKVRASQEKALAALQAYTTTHSPETPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKGKDGDGPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00033911;
- 90% Identity
- iTF_00806824;
- 80% Identity
- iTF_01302488;