Rfor003249.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- F52C9.6
- Assembly
- GCA_963082605.1
- Location
- OY720205.1:14255726-14257282[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4e-05 0.61 10.5 0.0 107 151 141 182 122 268 0.85 2 2 7.3e-05 0.82 10.1 0.0 107 151 358 399 339 418 0.82
Sequence Information
- Coding Sequence
- ATGTTCGGCGTGGAAAGGGGCGTGAAACAGGGAGACCCATTATCTCCGCAACTTTTTACAAGTTGTCTCGAAGAGGTGTTCCGTAAGCTGGCTTCAAAATGGGAGACACTGGGCATTGATATCGGCGGCAAAAGGTTATCTAACCTCCGCTATGCCGATGACATTGTCCTTTTCTCCCATTCCGCATCTGAGCTTCAAAGAATGCTTGAAGATCTAAGCACGGCAAGCCTTGAGGTTGGACTTCAGATGAATCGGATGAAGACTAAGGTCATGACCAACAGCACCAAGCGCAAGATCGAGGTAGATGGGCAGGTAATACACTATGTCAAGGAGTATGTATACCTGGGCCAGATAGCTTCCTTCGAAAACAGGCAAAGTAAGGAGATCGATCGCCGTATTGATAATGCCTGGAAGAGCTTCTGGTCCATGAAGGCGCTAATGAAGGGTAACCTTCCACTATGTCTCAAGCGCAAACTCCTTGATATGTGTATCCTGCCCATACTTACCTACGGTGCACAGACCTGGTCACTCACTGAAGACCAGAAGTTCAAGCTCAAGGTTTGTCAacgagcaatggagcgtagTATTCTCGGCGTACGTCGCGTGGATCGCGTTCGGAACGCCACACTGCGCTCCAAAACTCAGGTCAAGGATGTCGGCGTGGAAAGGGGCGTGAAACAGGGAGACCCATTATCTCCGCAACTTTTTACAAGTTGTCTCGAAGAGGTGTTCCGTAAGCTGGCTTCAAAATGGGAGACACTGGGCATTGATATCGGCGGCAAAAGGTTATCTAACCTCCGCTATGCCGATGACATTGTCCTTTTCTCCCATTCCGCATCTGAGCTTCAAAGAATGCTTGAAGATCTAAGCACGGCAAGCCTTGAGGTTGGACTTCAGATGAATCGGATGAAGACTAAGGTCATGACCAACAGCACCAAGCGCAAGATCGAGGTAGATGGGCAGGTAATACACTATGTCAAGGAGTATGTATACCTGGGCCAGATAGCTTCCTTCGAAAACAGGCAAAGTAAGGAGATCGATCGCCGTATTGATAATGCCTGGAAGAGCTTCTGGTCCATGAAGGCGCTAATGAAGGGTAACCTTCCACTATGTCTCAAGCGCAAACTCCTTGATATGTGTATCCTGCCCATACTTACCTACGGTGCACAGACCTGGTCACTCACTGAAGACCAGAAGTTCAAGCTCAAGGTTTGTCAacgagcaatggagcgtagTATTCTCGGCGTACGTCGCGTGGATCGCGTTCGGAACGCCACACTGCGCTCCAAAACTCAGGTCAAGGATGTCGGTGTGAAGTCAGCGCagttaaaatgggactgggcgggacacgtctGCCGCATGCCACAAGACAGGTGGGCTAGAACGGCTACTATGTGGATACCGGATGGCCGCAGGGGacgaggcagaccaaggaggaagtggcgtgatgatttggacgcacatgataaagattggcggactgtagcccttgacaggagcctatggaagcagaaaggggaggcctttgcccagcagtgggacacacaaataggctag
- Protein Sequence
- MFGVERGVKQGDPLSPQLFTSCLEEVFRKLASKWETLGIDIGGKRLSNLRYADDIVLFSHSASELQRMLEDLSTASLEVGLQMNRMKTKVMTNSTKRKIEVDGQVIHYVKEYVYLGQIASFENRQSKEIDRRIDNAWKSFWSMKALMKGNLPLCLKRKLLDMCILPILTYGAQTWSLTEDQKFKLKVCQRAMERSILGVRRVDRVRNATLRSKTQVKDVGVERGVKQGDPLSPQLFTSCLEEVFRKLASKWETLGIDIGGKRLSNLRYADDIVLFSHSASELQRMLEDLSTASLEVGLQMNRMKTKVMTNSTKRKIEVDGQVIHYVKEYVYLGQIASFENRQSKEIDRRIDNAWKSFWSMKALMKGNLPLCLKRKLLDMCILPILTYGAQTWSLTEDQKFKLKVCQRAMERSILGVRRVDRVRNATLRSKTQVKDVGVKSAQLKWDWAGHVCRMPQDRWARTATMWIPDGRRGRGRPRRKWRDDLDAHDKDWRTVALDRSLWKQKGEAFAQQWDTQIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -