Basic Information

Insect: Rhodophaea formosa
Gene Symbol: clz9
Assembly: GCA_963082605.1
Location: OY720211.1:3820007-3822769[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 9.6e-10 3.9e-07 30.5 0.0 1 38 14 51 14 56 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	9.6e-10	3.9e-07	30.5	0.0	1	38	14	51	14	56	0.92

Sequence Information

Coding Sequence: ATGCCCCGAACTTACGTAAAAACAAAGATTAAAACCTACACTCCACAAAATTTAGCTGAAGCCatcgaaaaagtaaaaaatggcGAAATGACGCAATATAGTGCAGCGCAACAGTACAATATTCCCATGACGACTCTTTTTGATCACATTAAAGCAAGTGCAGGAAATCTCAGGCCAAATGCAGGTAGACCAACTGCTTTACCTTTAGAAGACGAAAACGAATTAGCCGAAACAATTACAGTCATGGAAAGATGGGGTTTTGGACTTTCAAGACTTGAAATAATGGAGATTGTCGCTGAATATGTGCGGCTGAATGAAATTCCAACGCCATTTAAAAACAATGTCCCAGGTGCAGACTGGTTCATTAATTTTCGGAAACGACATGGATTGTCTATCAAAAAAGCACAGTCTGTAGAATAcgtgagaaaaaaaatgacagatCCTTTCGTCATtgctaaatattttgatttactgcaaaatactttaaaagatTTGAATCTCTTTGAAAGACCCCAGGCCATATGGAACTTGGATGAAACATCAATGTGCCTGGATCCATccaaaacaaaagttgttggtaaaataaacaaaccttGTTCAAGAACAACTTACGGAAGTGGAAAGGAAAACACAACCGTGTTGGCAGGTGCAAACGCCAGCGGCAAGAAGTTGCCGCCTTTGATTGTTTTCAAAGGGAAAGATACTTGGGATACATGGATGGCTGAGCAAGACCCCGCTAAATACGATTTTCAAGTAGCTTATGCGACCAGTGCTAAAGGGTGGATggaaacaacaatttttttaaattatttcaaaaatgtacTCATCCCAAATCTGGGAGAAGAGCGACCGGTCCTTGTTATTTATGATGGTCACTCAACCCACGTCAATATAGGAGTTGTGCAGCTAGCAATCGAAAACAATATAACGATACTTAAACTACCGCCACATACGTCTCATTTGCTGCAGCCTCTAGACCTCGCAGTATTTAAGTCGTTCAAATCTATATGGGACGCCAAACTGGTAGAGTGGCAGCGTAGAAATGTTGGCAcaaaaatgccaaaaaaaatCTTCTCGCAAACACTAGCAGATACTTGGCAACAAACAAGCCCCGATGTAATCAAAAGCGGGTTTAGAAAAGCTGGGATTTATCCATTCAATGCACAAGTGATACCCGTGGAAAAGTTTGATCCAGATGCATATAAAAGATACCAGAAAAAGATATCAGAAGCACATCGTGCCCCTGTAAGCCCAAAGTCACTCAGAGAAATTTGTACtgctttttgtataaatttgtttAACAATCTTACGGTGACTTATGATGCTCTTGACAAGTCAAGCTCTGACAAAGTTACCTTGCTGTCTGAAATATCAAAGTCCAATGTCCAGACTTTGAGATTTGTAGCTAATCAGCCAACTCAATTACCCACATGTTTAAAGAATTCTAAGTCAATACAaaattcaacaaaattaaacattatatcaaatcaaatcatcgTCAAAGCACCATTAAATCAACCCCAACCCCAACGATCATGCACATTTGAAGAACTGGTGCTAAGAAAAATCGAACAGGACAAAAAGGATACTACTTTGACAAAAAGGAAACGTGTTACTACAGGCGCTGAAGTAATAACTGCAACCATGgctaaaaaaattttggaaGAAAGGGAAAAAACCAAAGGGACTAAAAagctaacaaaaacaaataaaaatgattttaaaaaagggACAAGAGTAACCAAAAACGAGAGttcaatcaacaaaaaaaatagaacaGCACAAGCGCAAAAAGACCAGCCAGGCCCCTCAGGCataaataataagaagaaaagaaaacgcCAGCCTTCATTTGAAAGCATCACTAGTGTATCAGACATCATCAGCGACCACAGTGACTCTGATATTTTTGATTGTGAAGAATCCATGGATGAATATTTTCAAGAAAACCAAGAAACACAAAAGTcacaaaataagacaaaagaTGTGAAATACAGTAAAAGATATGAAAATTCAACAGATCTCAAGATACTGACTAACATAAATCCGAATCCCCTCTCTACTAAAGGTAAAGGTGTAGGCAAAAAAAGTAaaggtaaagaaaataaagcgaataaaaaCGACGAAGAAAAGGAACAGAAAAGTCATGAAAGTGATAACGAAGACGGCGTTGATCTTTTTATGAGAGGAAAAAATATGACTACAAGACAAGACTCAACAACAAATGACAAGGATGAGCCATTGCCACTAGAACATACAAGCATGGATATAGTTCAAGATGAACAAGAAGTGGACCTGGCCTTTAAGGAAGTTTACAAATTAAATGATAAAGAAAATCAAGTGAATAacgaagacaaaaaaaaaccagatATACGACACATTGTAAGAGCTAACGGAGACGACATTGAAAAAGACCTGGAAAATAAAGACATAGTACACGAAATTCAAGAAGAGGACACTACCATGAAGGAAATTTACAAAGTGAATGATTCAGTGCTTGTCAGATATTTCATCAGAAAAAAATGGAGGTACTATATTGGGCTCATAGAAGCAGTAACAACAATGCATGAAGAAACGCGCTTTTCAATCAACTTCTTAAAAAAGATGAGATCACAGCAGCAGCTAACCTTCatgatgacaaaaaaaaaagatattgatgTAGTTACCGAGTCATTAATAGTGAAGAAGatagatatacaaaaaaaagataatgaAAAACAGTATCACTTATGTAATGATGGagatacaatttattttgactGA
Protein Sequence: MPRTYVKTKIKTYTPQNLAEAIEKVKNGEMTQYSAAQQYNIPMTTLFDHIKASAGNLRPNAGRPTALPLEDENELAETITVMERWGFGLSRLEIMEIVAEYVRLNEIPTPFKNNVPGADWFINFRKRHGLSIKKAQSVEYVRKKMTDPFVIAKYFDLLQNTLKDLNLFERPQAIWNLDETSMCLDPSKTKVVGKINKPCSRTTYGSGKENTTVLAGANASGKKLPPLIVFKGKDTWDTWMAEQDPAKYDFQVAYATSAKGWMETTIFLNYFKNVLIPNLGEERPVLVIYDGHSTHVNIGVVQLAIENNITILKLPPHTSHLLQPLDLAVFKSFKSIWDAKLVEWQRRNVGTKMPKKIFSQTLADTWQQTSPDVIKSGFRKAGIYPFNAQVIPVEKFDPDAYKRYQKKISEAHRAPVSPKSLREICTAFCINLFNNLTVTYDALDKSSSDKVTLLSEISKSNVQTLRFVANQPTQLPTCLKNSKSIQNSTKLNIISNQIIVKAPLNQPQPQRSCTFEELVLRKIEQDKKDTTLTKRKRVTTGAEVITATMAKKILEEREKTKGTKKLTKTNKNDFKKGTRVTKNESSINKKNRTAQAQKDQPGPSGINNKKKRKRQPSFESITSVSDIISDHSDSDIFDCEESMDEYFQENQETQKSQNKTKDVKYSKRYENSTDLKILTNINPNPLSTKGKGVGKKSKGKENKANKNDEEKEQKSHESDNEDGVDLFMRGKNMTTRQDSTTNDKDEPLPLEHTSMDIVQDEQEVDLAFKEVYKLNDKENQVNNEDKKKPDIRHIVRANGDDIEKDLENKDIVHEIQEEDTTMKEIYKVNDSVLVRYFIRKKWRYYIGLIEAVTTMHEETRFSINFLKKMRSQQQLTFMMTKKKDIDVVTESLIVKKIDIQKKDNEKQYHLCNDGDTIYFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00012969;
90% Identity: iTF_00012969;
80% Identity: iTF_01302259; iTF_01302260;