Rfor025302.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720227.1:9873528-9874730[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.1e-12 3.3e-09 37.2 0.0 1 41 17 57 17 61 0.90 2 2 3.7 1.5e+03 -0.2 0.1 13 23 138 149 131 150 0.65
Sequence Information
- Coding Sequence
- atGCCGAGAAAATACGTGAGGAAGCACACGGTGGTCCGAGGGCAGTGGACTGAAGAAAACTTAATTCTGGcaattgaaaaagtaaaaaaaggtgaaatatCAAAAAACGAAGCCCAGAGAATTTATGGAATACCAATTCGTACCTTGAGTAGGCGACTCATAACCGGCAATACGATTAAATCTGGATTAGGTCCACAAGCATCACTTGGAACCGAGAACGAAAAACGATTGGCATCTTATATCAAACGTTTAGCTAACGCTGGTTTTGCGCCTGATAGGAATACTATTCGTTCCCTTGCTTATCAGTTTGCAGAGAAACTTGGAATAAAACATAAGTTTTGTAAGGAAAAAGAGAAGGCTGGCCAACATTGGCTGACATCTTTTCTAGAGAGAAACAAAGATATCTCAGTACGTCAAGCAGAAGGTTTATCAGTTGCAAGAGCTCAAGGAATGAACAGAGAAGAAGTGGGTGCATTTTTTAAACTGCTTGAAGAAGAAAtgataaaacataatttaactaACAAACCGGCGAATATTTTCAATGTTGACGAGTCTGGGTTTcaactaataaataaacctGGAAAAGTATTGGCGGCTAAAGGGACAAAGGACGTTCATGTGATTACACCTAGAGAAAAAGGAGAAACAATTTCTCTGGTTGCATGTTGCAGTGCAGAAGGTCGTTTTCTACCTCCAGTATTAATAATGAAAGGAGTCAATAAAAAGGCCGAGTTTTCTGATGGCTTACCAAATGGGTCCGACGTCTACATGAATAAGAAGTCATCCTATATTAATTCTGAACTATTTTTGCGTTGGTTCAAGGAACATTTTCTACCCAAGAAACCAATAGAAGgtaaaacaattttgattttagATGGTCACACTTCACACTCCAATTCAATTGATCTGGAAAGCATGGGGTAA
- Protein Sequence
- MPRKYVRKHTVVRGQWTEENLILAIEKVKKGEISKNEAQRIYGIPIRTLSRRLITGNTIKSGLGPQASLGTENEKRLASYIKRLANAGFAPDRNTIRSLAYQFAEKLGIKHKFCKEKEKAGQHWLTSFLERNKDISVRQAEGLSVARAQGMNREEVGAFFKLLEEEMIKHNLTNKPANIFNVDESGFQLINKPGKVLAAKGTKDVHVITPREKGETISLVACCSAEGRFLPPVLIMKGVNKKAEFSDGLPNGSDVYMNKKSSYINSELFLRWFKEHFLPKKPIEGKTILILDGHTSHSNSIDLESMG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01178353;
- 90% Identity
- iTF_01178353;
- 80% Identity
- -