Rfor013851.1
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720214.1:21495329-21504442[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-10 5.7e-08 33.2 0.0 4 39 147 183 144 187 0.90 2 4 9.4e-11 3.9e-08 33.8 0.3 2 39 199 236 198 239 0.92 3 4 8.9e-16 3.6e-13 49.9 0.1 2 45 254 298 253 298 0.96 4 4 6.2e-18 2.5e-15 56.7 0.0 1 42 305 347 305 350 0.94
Sequence Information
- Coding Sequence
- ATGCCCGGCAACGAAGCGCCTTTACTCGTCAAACGCGAATCGCTCTCGGAGGAAGACGACGGCGACTCGTTCGCGTACAACTACTTAACTACTCAGTCCCACGGGCTCGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCCGCCGCCACGCCTGTTTGCGTGAAACAGGAGCCGACAGACGCCACCCCCGCCACCACGCTGGAAACTCTGGAACCTGCCCCGCATGCTACGGGCGCAACTCTCCTCGACAGACACATGTCAATGCTCTGCTCAACCGAAGTGCCTGAGTCATCGGACTTTATGCCCCTGATGGCTATCAAAGACGAGCCCGTGTCTGAAGGAGAACAACAACACTTCAGTGGTGAAGATACCAGCGACTCCTGTGGTACTCAAGCTGAACCGCTGACACGAACTAGTCCCAAGAGCTGGACCCAGCGTGATATGGATAATGCGCTTGAAGCGCTGCGCAAACACAACATGAGTCTCACAAAGGCATCAGCGACATACGGCATCCCGTCCACGACGCTGTGGCAGCGCGCACACCGGCTCGGCATCGACACGCCCAAGAAGGAAGGCGCCTCCAAGTCCTGGAGCGAGGCCGACTTGAGGGGGGCGCTCCATGCTCTGCGCGCCGGCGCCATATCCGCCAACAAGGCCAGCAAAGCTTACGGGATCCCGAGCAGCACGCTGTACAAGATCGCGCGCCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCCACGGCGTGGCGCCGCGCCGACCTGGCGCGCGCGCTGGCCGCCATCCGCGCCGGACAGGCCTCCGTGCAGCGCGCCGCCACACAGTTCGGCATCCCCACAGGCACCTTGTACGGACGCTGTAAGCGCGAAGGCATCGAGTTGTCGCGCTCCAACCCCACTCCTTGGTCCGAAGACGCCATGGGCGAGGCGCTTGAAGcagtcagGGTGGGTCAAATGTCGATAAACCAGGCGGCTATCCACTACAACCTGCCTTACTCCTCGCTGTACGGAAGATTCAAGAGGTGCAAATATCAACCACAGAATTTCCAGCCGATGCAGCAGCCAGACATGCAGAAGCCGCCGGAGATGTCGCCGTGCGCGCCGCACGACATGTACTACCAGCACGCGCCCGACTACGCGCCGCACGCCGGCCACGCGCTGGACGGCAACATGGCGGCGCTCGGCCACGCGGGGTACTACACCGGCGTCGTCAGCTGA
- Protein Sequence
- MPGNEAPLLVKRESLSEEDDGDSFAYNYLTTQSHGLEELAPLAPAGPAATPVCVKQEPTDATPATTLETLEPAPHATGATLLDRHMSMLCSTEVPESSDFMPLMAIKDEPVSEGEQQHFSGEDTSDSCGTQAEPLTRTSPKSWTQRDMDNALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAIRAGQASVQRAATQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQPQNFQPMQQPDMQKPPEMSPCAPHDMYYQHAPDYAPHAGHALDGNMAALGHAGYYTGVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00720139;
- 90% Identity
- -
- 80% Identity
- -