Rpro006514.1
Basic Information
- Insect
- Rhodnius prolixus
- Gene Symbol
- L
- Assembly
- None
- Location
- HiC:9830640-9854804[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.2e-05 0.0024 18.4 4.9 1 23 75 97 75 97 0.98 2 15 0.093 10 6.9 5.3 1 23 103 125 103 125 0.98 3 15 3.5e-07 3.9e-05 24.0 2.6 1 23 131 153 131 153 0.99 4 15 5.7e-06 0.00064 20.2 0.1 1 23 159 181 159 181 0.98 5 15 0.00018 0.02 15.5 2.1 1 23 216 239 216 239 0.98 6 15 1.8 2e+02 2.9 1.2 3 21 375 393 374 395 0.94 7 15 0.086 9.6 7.1 0.0 3 23 419 439 418 439 0.98 8 15 0.0035 0.39 11.4 2.3 3 23 449 470 447 470 0.94 9 15 0.046 5.2 7.9 0.5 2 23 550 571 549 571 0.96 10 15 0.0019 0.21 12.2 1.3 1 21 575 595 575 598 0.96 11 15 4 4.5e+02 1.8 0.1 9 23 655 670 647 671 0.80 12 15 0.00087 0.097 13.3 4.1 2 23 683 704 682 704 0.96 13 15 0.0024 0.27 11.9 0.9 1 23 714 736 714 736 0.98 14 15 3.1 3.5e+02 2.2 0.4 2 23 744 765 743 765 0.88 15 15 1.2 1.3e+02 3.5 0.1 3 23 774 794 773 794 0.96
Sequence Information
- Coding Sequence
- ATGCTCTTCAAAGGTAACTCTTCCAGACTGCAGTTGCTCATCGAGAAGATACACGCGCATAAGGAAGTTCCGCCCGATCAGGAGGTTAAAGAAGGCGGAGAAACGGAAGGTGGAAGTTCATCAGAAACGAGCAGTGCCTCTTCTTGTCCGACGCCAAACTCTGCCAGCTCTTTACAAGAGTCCGACCTGGCCTATACGGTTGGAGTGACCGAGACAACTCCATATCCATGCCATTTCTGCCATAAAGCCTTCCCGAGATTGTCCTATCTTAAGAAACATGAACAGAGCCATAGCGAGCACATGCCGTTTCGTTGCGAATACTGCCTGCGGCTGTTCAAGCACAAGCGAAGTCGTGATCGCCACATCAAGCTGCACACTGGTGACAAGAAATATCGCTGCACCAAATGCGAGGCGGCATTCTCTAGAAGCGATCATTTAAAGATTCATATGAAGACGCACGACAATCAGAAGCCGTTCCAATGCACTGTCTGCAACCGTGGCTACAACACTGCTGCTGCACTCACCTCGCATATGCAGATTCACAAGCGCAACGCTGATGGATCACTCGCTGCACAGGAGGCtgcaactaataataataataataataataataacattaataataataacaataagataCAAACCTATAAGTGCCTACAATGCCATGAAGTCTTTCACAAACCAGAAGAACTCACGGAACATATTTCAACTTTGCATGGTGAGTCGATCAACAGTGTGCACAGAAAATGTAAGGACAGCGTGGCTAAAACCAGCTTAGCTTGCATCTATTGTGCAAATGATAATTTCGCAACAATAGAGGCACTACATCACCATGTGAAAACGGTGCATAGTAACAGCCAGAACGATGTGTCCGAGCTGAATTACAACGTAGTGTGTCCGGTGTGTTCGATAATCGTACCGGTTGGCTCCTTAGAGTCGCATACGGCGTCTTTGCACGGCAGTACGGTGCGCAGCCACGGAAGTCTGGTGCAAACCAACCATGAACTGACTGGTTGGCACCTAGATACTCCAAGTGCCAACAAGAGACCAAGACTGCCTTTCACTACCTCTGACAGTTTACTTCAAAAGAGAGTGGAGTACTCGCACCCGGGCGTACTGCTGTGCTCGCAGTGTGACGCAGCGCTGCCGGACTTCGAGTCGTTCCGGCGACATGTCAAGTGTCATCTGGAGGAGCGCTCGTCGCATGGTACCGGTGAGTTGGGAAAGACAGGAGCGAACAGCTCTGTGCCACTCTGCCCCTACTGCGGCAGCTCACAGCCCAGCTCGGAGAGCCTAGTCCAGCACATCGGTACCCACCTGTTGGCCCGCATCACCGATTACGGCTGCAACACCTGCCTCCGCCTTTTCTCCACTTTAGACAACCTGCGCAGACACCTAATGGACTGCCATGCGTTCGTCGCCTACAGATGTTGCCTTTGCTCTGATCTGTTCGAGTCAAAAGTGGCGATTGAGGTGCATTTCACGGCGAAGCACTGCAACGAAGTGAAGCAATATAGGTGCACCGCGTGCCCGAATATCGCGCCTCTCGGCTCAGAACACGAGTTTTGGCTGCACATCAAGACAGTCCACTGCAACTTCAAGATCAACTCACCTACTCCCCCTAGTATTGcgTCTCCAAGACTTCTCCGCTGCGTATTCTGCAGCATGACCTTCTCAACAGAGCTAGAAATGCAATATCACCTGTCTGTCCACACCAAGCAGTACCAGTGCCCGGTGTGTTCGGAAGGGTTTCACGTGGAGTACCTGTTGGAGAAGCACATGCAGTGTGCTCATGGTCCTGAGACATCGAGCAGTGTGGGAGAGATGCAGACGGACAGTACAGTCTTGCAGCTGGGCGCAGCTAATGAGCCCACTACAGAAGGCGCTTCTAAGAAACCCGACATTCCgcacaacaacaataacaataacaacacCAAGGACTGCGGCATTTGTGAGGCCGGTGACTTCGCATCTGAGGCTGAGCTAAACGCTCACCGCAAATTAGTGCATCACCTAAAAACTTCTACCACAGCTAAAGTGAGTCTGCACTGTGCCTACTGTAAGGAGAACTGTAAGTCTAGAGCTGAATTGGAGACCCACATGAAGACACACTGCCAGGGCGGACTAGGCCCCGGCAAACACAAGTGCAACATTTGCGACGAGCTGTGTAGTTCAGCTGTTGCTCTTGCAGAACACAAACTTACCCACTGCAAGGTAGTTCATGGCACTAAATGTATCCAGTGCAAGACTAATCTAACGGATGAAGAAAGTTTTACGGCTCATCTAGGACAGCATGGGTGCAGCAGTCTGCCGGCGCCTTGTGTCATTTGCAGACAAACCCTGAACACGGAGACCGAAGTCATGCTGCACGCTCGTCTACATCTTGGTTTGGAGAGCAATCACGCAGCGCTGGGCCAGCATGTTTCGTTGCTGCATGCTAACGCCGCCTTCACAGTCGCCAAGGAATGGAGCGAAAGCAGTCTGGAGCTGGCCACGCCCTGGAAGAAGGAGCCCATGTCACAGCTGGCACAGTTACCTGTTGGCTGGAACTTCCGGCCAGACCTAGAGCGTCAGTACAAAGGTCACGTCCTGGCTAGAGCGCCTAGCTTACTCAGCGATTCACAGGCACTGCTTCCTGGCTACAGTAAGGGTAAATCTGAAATTTGTCGAAGTAAAGCTACAGAGTTGATTGATACCAGGCTTGTTAAAATTGAACGGGAAGATGTTTCCTACGCAGAGAATAGTTCCACTTCCCAACAAACTGCAAAGAATTGA
- Protein Sequence
- MLFKGNSSRLQLLIEKIHAHKEVPPDQEVKEGGETEGGSSSETSSASSCPTPNSASSLQESDLAYTVGVTETTPYPCHFCHKAFPRLSYLKKHEQSHSEHMPFRCEYCLRLFKHKRSRDRHIKLHTGDKKYRCTKCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQIHKRNADGSLAAQEAATNNNNNNNNNINNNNNKIQTYKCLQCHEVFHKPEELTEHISTLHGESINSVHRKCKDSVAKTSLACIYCANDNFATIEALHHHVKTVHSNSQNDVSELNYNVVCPVCSIIVPVGSLESHTASLHGSTVRSHGSLVQTNHELTGWHLDTPSANKRPRLPFTTSDSLLQKRVEYSHPGVLLCSQCDAALPDFESFRRHVKCHLEERSSHGTGELGKTGANSSVPLCPYCGSSQPSSESLVQHIGTHLLARITDYGCNTCLRLFSTLDNLRRHLMDCHAFVAYRCCLCSDLFESKVAIEVHFTAKHCNEVKQYRCTACPNIAPLGSEHEFWLHIKTVHCNFKINSPTPPSIASPRLLRCVFCSMTFSTELEMQYHLSVHTKQYQCPVCSEGFHVEYLLEKHMQCAHGPETSSSVGEMQTDSTVLQLGAANEPTTEGASKKPDIPHNNNNNNNTKDCGICEAGDFASEAELNAHRKLVHHLKTSTTAKVSLHCAYCKENCKSRAELETHMKTHCQGGLGPGKHKCNICDELCSSAVALAEHKLTHCKVVHGTKCIQCKTNLTDEESFTAHLGQHGCSSLPAPCVICRQTLNTETEVMLHARLHLGLESNHAALGQHVSLLHANAAFTVAKEWSESSLELATPWKKEPMSQLAQLPVGWNFRPDLERQYKGHVLARAPSLLSDSQALLPGYSKGKSEICRSKATELIDTRLVKIEREDVSYAENSSTSQQTAKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01479661;
- 90% Identity
- -
- 80% Identity
- -