Basic Information

Insect: Rhodnius prolixus
Gene Symbol: -
Assembly: None
Location: HiC:19071726-19078220[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2 2.3e+02 2.7 0.1 3 23 7 27 5 27 0.90

2 14 0.11 12 6.8 0.9 1 23 302 325 302 325 0.89

3 14 0.12 13 6.6 0.1 2 23 366 388 366 388 0.96

4 14 6.1e-05 0.0068 17.0 1.5 2 23 391 412 390 412 0.96

5 14 1.4e-05 0.0016 19.0 1.4 1 23 418 440 418 440 0.95

6 14 4.1e-06 0.00046 20.6 1.3 2 23 447 469 446 469 0.93

7 14 0.0017 0.19 12.4 0.4 5 23 482 500 481 500 0.96

8 14 0.00032 0.035 14.7 3.8 2 23 506 528 505 528 0.97

9 14 0.0023 0.25 12.0 0.3 2 23 549 569 548 569 0.96

10 14 0.047 5.2 7.9 1.8 5 20 579 594 577 597 0.88

11 14 0.00011 0.012 16.2 0.3 1 23 605 627 605 627 0.98

12 14 8.8e-05 0.0098 16.5 5.2 1 23 633 655 633 655 0.97

13 14 1.1e-06 0.00012 22.5 1.5 1 23 661 683 661 683 0.98

14 14 0.00057 0.063 13.9 9.2 1 23 689 711 689 712 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2	2.3e+02	2.7	0.1	3	23	7	27	5	27	0.90
2	14	0.11	12	6.8	0.9	1	23	302	325	302	325	0.89
3	14	0.12	13	6.6	0.1	2	23	366	388	366	388	0.96
4	14	6.1e-05	0.0068	17.0	1.5	2	23	391	412	390	412	0.96
5	14	1.4e-05	0.0016	19.0	1.4	1	23	418	440	418	440	0.95
6	14	4.1e-06	0.00046	20.6	1.3	2	23	447	469	446	469	0.93
7	14	0.0017	0.19	12.4	0.4	5	23	482	500	481	500	0.96
8	14	0.00032	0.035	14.7	3.8	2	23	506	528	505	528	0.97
9	14	0.0023	0.25	12.0	0.3	2	23	549	569	548	569	0.96
10	14	0.047	5.2	7.9	1.8	5	20	579	594	577	597	0.88
11	14	0.00011	0.012	16.2	0.3	1	23	605	627	605	627	0.98
12	14	8.8e-05	0.0098	16.5	5.2	1	23	633	655	633	655	0.97
13	14	1.1e-06	0.00012	22.5	1.5	1	23	661	683	661	683	0.98
14	14	0.00057	0.063	13.9	9.2	1	23	689	711	689	712	0.96

Sequence Information

Coding Sequence: atgGAAAGCCATTTAGCTTGTCCTGTATGTACTCTCTATTTGAGAGAGGGTATGTCTATGCAAAGTCATTTAAATACCCACCCAAAGGATCAAGTGATAGATGCCCTGGTCAGAGTTTACACTACAGAAAGAACCACAAATGTTCAACCAGATCCTCAGCCGCCTGCAATTTTCAATCCTTTCCAAGTAGTATCTGAGGAGCATATAATACTTGGGCGACAGCAGGTGACCAACATCATTCACGCCCCTCTTTTGCCGTATCATTTTTATCAACAGCAACCACAACCTGTGGTGAGTGATTACTTAGGACAAACTAGTGATAATGCTCGTGGGTCAGAATCTGTTCTAAGTTTAGGCCAAAATGGTTCAGGGAGTGGCTCAGGACTTCTTACTACACTTGTCAACGTTCAAGATGAAGGAGCGATTGAAATGAACGTCCTTAATGATAACAGTAAGTGTTTTATGGACGTACAGAATACGTCAGTTTCTCCTGTCAATCGTTCTGAGCTCCCAATAAAAGCAGACATTCCAACACAAGTTAGACCTGATGAAAACGCAGATCAGTACATTACCTCTGATTGCGATTATCAAGATGAAGATGCCAGGCATAGTGATGACTTGGATGATCCAGGTTATGGCATAGATGTAAATTCAAAACTTACTGCCGACGAACGGAGTTGTCTCTCCAATGTACAAACTGGCGATGGTTCACCTCAGAGAGTTGATCTTTCAGGAAATAGTAATTTGCACTCTACTAACAATTCCGTATGGCTTCGAGAAGACCTAAACCCTACTGTACAATACGAAAACAGTGGCGTGAAAGATATTGCAAATGCTCCAGCTGTGGTAACTACCTGGGAACCTACAGTAGCCTCAGAGAACAAgccaaatgttaagaaaagaTATCAGTGTTTATATTGTGAGGAAGTTTTTACATGTCCAAAAGAAAGAAGAGTACATGTGGCATCATTGCATTGTAGTAACGAGGCTAAATCAAAGAAAGGAGAAGTCATTAGTACTAAATGTGACATGAAGCTTCCCGCTTCTAGGGAGTTGAAGGCACAGACCAGATTAGTACGTAAGAAGATCACTAGACAGTGCGATGTTTGTTTGGAAGAATTTGTATCTTTGCAAGCATACAGCGAGCACATTTCTAAAGTTCATCCTTTAGAATGTCGGACATGTGGCAAGACTTTTCATACGAAAGGAGGTTTAACTGCTCATTCAAAGATCCATATGGCTTTGAAGCCTCATGCATGCACCCTTTGTCCAAAAACATTCATTACAAATCAGAAATTAAAAGAGCACATGAATGGTCATACTGGTCATAGTCCCATTCAGTGTACAATGTGTGATCGAAAATTCAAAAGGTATTCCAATCTGAAGCAACATAAAGACATTGCTCACTTCTCTGTaaagaagaaaatcaaagaataCTTTTGTGAATGCGGTGAAACATTTATCTCGAAGAAAAAACTTGAATGGCATAAAGAAACGCATGCAGATAAGCCAAAACAATGTATGCACTGCagtgaaaaatatattcatagtGCAAGCTTGACTAGGCACATAAGGAAAGCCCATGATAATGAATATATCCCTCCTACATTGGATGGTAAACCGgacaataaaaggaaaaatgttGTCTGCACCATTTGCAATATGACTTTTCTAGATTCTTCTTTACGTGCGCATATGAAGCAGCATGGAACTATAAAACAGTTTGGTTGTATTGTGTGTggtaaaaaatttcatactaaatgGAATTTATCCTTACACAGATGGACCCATGCTTCACGTATGTCTAAACCTTATAAATGTACAATGTGCAAGGGTGCGTTCTTACGACAGTCTGAACTACAAGCCCATATCCGAGCCCATTATGGCAATAAACCTTACACATGTAATCATTGTGGTATGCAATTTAATCGTAAACATAATTGGTTGAGACAtgaaaaagaacatttaatgGAGAAAAAGTATACTTGCGAAGAATGTGGCAAATCATTTCATAGGAATTATTATCTAGTCGATCATGCCAGGGTACACACGGGTGTAAAACCATACACATGTCATATCTGTAACAAAACTTCATCAACTAAATCTAATCATAATAAACATGTCAGGACCCATCATGCCCGTGAAGCTGTAAATACCGAGGCGtga
Protein Sequence: MESHLACPVCTLYLREGMSMQSHLNTHPKDQVIDALVRVYTTERTTNVQPDPQPPAIFNPFQVVSEEHIILGRQQVTNIIHAPLLPYHFYQQQPQPVVSDYLGQTSDNARGSESVLSLGQNGSGSGSGLLTTLVNVQDEGAIEMNVLNDNSKCFMDVQNTSVSPVNRSELPIKADIPTQVRPDENADQYITSDCDYQDEDARHSDDLDDPGYGIDVNSKLTADERSCLSNVQTGDGSPQRVDLSGNSNLHSTNNSVWLREDLNPTVQYENSGVKDIANAPAVVTTWEPTVASENKPNVKKRYQCLYCEEVFTCPKERRVHVASLHCSNEAKSKKGEVISTKCDMKLPASRELKAQTRLVRKKITRQCDVCLEEFVSLQAYSEHISKVHPLECRTCGKTFHTKGGLTAHSKIHMALKPHACTLCPKTFITNQKLKEHMNGHTGHSPIQCTMCDRKFKRYSNLKQHKDIAHFSVKKKIKEYFCECGETFISKKKLEWHKETHADKPKQCMHCSEKYIHSASLTRHIRKAHDNEYIPPTLDGKPDNKRKNVVCTICNMTFLDSSLRAHMKQHGTIKQFGCIVCGKKFHTKWNLSLHRWTHASRMSKPYKCTMCKGAFLRQSELQAHIRAHYGNKPYTCNHCGMQFNRKHNWLRHEKEHLMEKKYTCEECGKSFHRNYYLVDHARVHTGVKPYTCHICNKTSSTKSNHNKHVRTHHAREAVNTEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01479631; iTF_01478965;
90% Identity: iTF_01479631; iTF_01478965;
80% Identity: -