Rpro013486.1
Basic Information
- Insect
- Rhodnius prolixus
- Gene Symbol
- -
- Assembly
- None
- Location
- HiC:4510835-4532379[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.9e-13 1.2e-09 37.8 0.3 7 71 549 611 545 614 0.83 2 3 1.2 4.8e+03 -2.6 0.0 44 56 646 658 646 662 0.84 3 3 0.1 4.1e+02 0.8 0.0 41 57 658 674 656 684 0.87
Sequence Information
- Coding Sequence
- ATGTCAAAGAATTCATTTGTAGaacagCACTACGGAATAGCCCGTGTCGAAATAGTTGAAGTAGGCGAAGAAGATTCAGACGAATATGATGAGGAAGATCTCGGAATCGCCATGCGACGGGATGAACACATTAACATGGAAAGCATCCAAAGGATCATCAATGGGGTGGTACCACCAAGACAAGAAGATGAAGCGGAAGAGGAAGAAGATGAGGCAGCGGATTCAAGCAAAAACGTGGACAACCAGGAGACTGCTCTCAGTCTTAATAGTGACAAACAAGTTACAAATTTAGATTCAAGTGAGAAAAGATTGTCCTCTGAAGATAGTGATGTTTTTTATGATTCTGTTGATGTGGATAGTTCAAAACTGGATGAAGATGATGATCACTTTGAAGATTCTGTTgataaagaaatgattgaagcaaattcaacaaataagaaaaatgatttagttTCTGTGGAAGgtacagAGGATAAAAGTAGTGAAAAAGTTAAAGTTGGAAAAGCCAATGATGGTCAAGTTCTTCTTGTAAAGCAGTCATCAATTGAAGGTGATGAGCAGCAAAGCGTTGCAGTTTCTAGTCAGGACAATATTTGTAATGaagaaaacataataattttatcaGACTCATCAGATGTTGATAAAAAGTCAGTTTCTTCAGGAAATGAAGCTGTAGAAGCTTCAAAATCTTCAACGAATCTTCAAAGTACAGAGGATAAAAGTAGTGAAAAAGTTAAAGTTGGAAAAGCCAATGATGGTCAAGTTCTTCTTGTAGAGCAGTCATCAATTGAAGGTGATGAGCAGCAAAGCGTTGCAGTTTCTAGTCAGGataggaaaaaaaaatcaatacgaAGGAAAGACTTTGTCAAAAAGAGACGACAAACTAAAGTAGAAAGTAAACAGCAAATCTTGCAGGACGATGCTGAGAATGACAGTGAAATAGAATTGATTGAATTTCCatcttttagtaaaaaagataacttgaaaaaatctttaattaagcGATCAGTTTCTAAAgctattataaaaaacaatagtGAGAAAAAGGTAGTAACgtcatttaagaagaagagaagaatacaatttgaaaagaaaacttgCAAGGATGATGTTCCTAATCTAGttttagaaGCACCGCGAGATAAAACTATCAAGACAGGTAATGAAGATTCAGTCGACAAGAAAGATCCGCCAAAGGCTGCTGAACCGAAAGAAACGGACCAGACTAACGAACATACTGAAGAGGGAATTATTGCCGTAGAAAAGCCAATTTTAAAGGTCCAGTCAAAAGAAGCTGATAAAAAACTTACATGTCCGAAGAAAACCACAACAAATATTTCATCAGTTGATGAAGAACAGTCAACTGATAAGACCACTGATGTAGATATGGTTGACAATTCAGAAAGACAGTTATTAAAACAGTTTCTAGATAGAGTGGGCAACGTTAAGCGAAGATTTAGTAAAACTAAACCAAAGAAGACCTCGGTAAAAAGTTCATCAGGTGAGATGTCATCTAGCTCTGCTGTTGAAGATAATGaTAATTCGAAATCAGAAGAAGAAATTGAACAACGTTCAGTAAAACCTACTAGAAAATTTCTTATAGGAgcttttaataatgaaaagccTGATTTAACTCATCCTCGTTACAGGAAACCACTTGAAATGGGTTGGGTCAGAGAGTTGGTGTACAGAAATCTGAGTAGCAATGACAAAAGGACTCGTTTTGCAGATGTATATTACTATACGCCTAAAGGAAAGAAATTAAGATCTAGCATTCAGGTTAAGCAGTATTtgCCACGAGGATTATCATTGAAGAATTTCACGTTCGCTAAAGAATCTCTTGGAATTAATGACAACGTTAGAGAAATAGTGAGATCAGCCCGTGTCAGCCTTAACAGTAAATTTGTAGATAACAAACGTGCCGTAGCTAATAACCGCAGAATTAAGGAATTGAAACGATATTTGAAGGCAAAGATGTTTTCGTCGAAAAAGAAAACTGCGAATTATCTTTCTAAGAATCCATTCAAAGCTGCCATGTGTAAGAAATCAGAAGTGGTTCAGGACTCAGAAAGCGAAACTAAGTTTAGCAATGATGAGTATACTGATGATGCGTCAAAACCATTTGTAGCTGctaaaaaatgtaagaaatcaGAAGTGGTTCAGGACTCAGAAAGCGAAACTAAGCATAGCAATGATGAGTATTCTGAGGATGATgataaaatgaaAAGATCTACTTGTACACAAAAGTGTCCAAAAGCATTACATTTTATACCAACTATTTTATGTATTGATTGTGAAATGAAATTCCATCCACAATGTGAAGGAATCACACTTGAAGATGAAAGTGATTTTGAAGACCTCACACCTATAGTggattatatttgtaaaAAATGTAGATTGATAAGGCACAGAAATGCAGGAGAACCTCTGAGATATTTTCCAACTCCATCTTCTTCTCCATCTTCGTTGATACTTCCGCCAACAGTACAGTTAGACCTTCATTCACCAGAAAAGAAACTGGACAGTACATCGACCATTCAAATGCCAGAAATCGATGTAGAAGTTGGCCGTCAACAGGTTGATCTCAGTTCTTCAACAgcagatgatgatgatgatgatgatgatgatgaaACAGAGATAATGTCTCCCATGTTATCACAAGGCGAGTCTGAATCTGATGAGAACTCCACTGAGGATAGTGAAGCGAATGAAATAGAAGATCAAGTTTATGCAGAAAATGCCAGTTTTATAGAAAACTCTCCGCCGGGCGAGTATATTGAAGATGTTAGTTCTGAACCAATAAATGAAGCTCAAATGTCTTTCAACAAACAAGATGGCGCAATTCTTTTACTTACAGGCGATGGAAGTAATCCCAGCATGCAAGTTTCCGCGAATGGAGAGCTACTTATTTCACAGAACAATCGTCAACTTGTTTGCAAAGGTTTACTGGGTAATGATGAcgaattgaatttgaattgcCCAGTCAATGAAGGGAAATCAACAAATCAGTCAGCTGATCAACAAATAGATCAAGAATTTGATGAAATAGTTCCTACACAAATTGAACCATCAAATGCTGAAGAATATGAAATGGTGGTCAACAATAGTGAATGCGGCAACAATAAACCTACTTTAACACTAATGACAGAAAATGGATTAATAAACTTGGCAATTGCTGGCATTGTTGATGAAGAATACAGTGCAAGATCATTAAAGGAAATACAATCAGAAGGAAAAAGTACAGCCAAAGAGGAGCAGATGTTGGAAAGTATGGCGGACAGTGAAAACAGTACAGATCATATCAAACATTCAGATGCTAAAAAAGAGGAAGAATTGATTTTGAAGAAAGCAAGGAATATGAAACCACCTTGTCATTGTGCGCTGAGTAAGACCACAGATCTgtacaaatgtaaaatatttactgaagCAGAACGTGCGATTATCTAtcataaattttggaaaaacctatcttggaaaaagaagaaaaaatttgtAGATGCTTTAGTGGAAAGATCAGGAAAATCAGGAGACGGGAGAAGTGGCGAGGACTCATGTATATTCAATTTGGAGAAAAATGGTGAGCGGTACAGAGTTTGTCGGAAAATGTTCCTAAATACACTTGGCATTGGAGAATGGAGTCTAAATAATTGGCTAAAGAATATTCATGATGGTTATAAACCAAGAAAATATTGGAACGATCTTACGTtacgttaa
- Protein Sequence
- MSKNSFVEQHYGIARVEIVEVGEEDSDEYDEEDLGIAMRRDEHINMESIQRIINGVVPPRQEDEAEEEEDEAADSSKNVDNQETALSLNSDKQVTNLDSSEKRLSSEDSDVFYDSVDVDSSKLDEDDDHFEDSVDKEMIEANSTNKKNDLVSVEGTEDKSSEKVKVGKANDGQVLLVKQSSIEGDEQQSVAVSSQDNICNEENIIILSDSSDVDKKSVSSGNEAVEASKSSTNLQSTEDKSSEKVKVGKANDGQVLLVEQSSIEGDEQQSVAVSSQDRKKKSIRRKDFVKKRRQTKVESKQQILQDDAENDSEIELIEFPSFSKKDNLKKSLIKRSVSKAIIKNNSEKKVVTSFKKKRRIQFEKKTCKDDVPNLVLEAPRDKTIKTGNEDSVDKKDPPKAAEPKETDQTNEHTEEGIIAVEKPILKVQSKEADKKLTCPKKTTTNISSVDEEQSTDKTTDVDMVDNSERQLLKQFLDRVGNVKRRFSKTKPKKTSVKSSSGEMSSSSAVEDNDNSKSEEEIEQRSVKPTRKFLIGAFNNEKPDLTHPRYRKPLEMGWVRELVYRNLSSNDKRTRFADVYYYTPKGKKLRSSIQVKQYLPRGLSLKNFTFAKESLGINDNVREIVRSARVSLNSKFVDNKRAVANNRRIKELKRYLKAKMFSSKKKTANYLSKNPFKAAMCKKSEVVQDSESETKFSNDEYTDDASKPFVAAKKCKKSEVVQDSESETKHSNDEYSEDDDKMKRSTCTQKCPKALHFIPTILCIDCEMKFHPQCEGITLEDESDFEDLTPIVDYICKKCRLIRHRNAGEPLRYFPTPSSSPSSLILPPTVQLDLHSPEKKLDSTSTIQMPEIDVEVGRQQVDLSSSTADDDDDDDDDETEIMSPMLSQGESESDENSTEDSEANEIEDQVYAENASFIENSPPGEYIEDVSSEPINEAQMSFNKQDGAILLLTGDGSNPSMQVSANGELLISQNNRQLVCKGLLGNDDELNLNCPVNEGKSTNQSADQQIDQEFDEIVPTQIEPSNAEEYEMVVNNSECGNNKPTLTLMTENGLINLAIAGIVDEEYSARSLKEIQSEGKSTAKEEQMLESMADSENSTDHIKHSDAKKEEELILKKARNMKPPCHCALSKTTDLYKCKIFTEAERAIIYHKFWKNLSWKKKKKFVDALVERSGKSGDGRSGEDSCIFNLEKNGERYRVCRKMFLNTLGIGEWSLNNWLKNIHDGYKPRKYWNDLTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -