Rros014327.1
Basic Information
- Insect
- Rhingia rostrata
- Gene Symbol
- -
- Assembly
- GCA_949824845.1
- Location
- OX463756.1:130637000-130638493[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4 3e+04 -4.1 0.0 26 31 86 91 85 104 0.74 2 11 3.5 2.6e+04 -3.9 0.2 26 44 161 180 159 183 0.56 3 11 0.24 1.8e+03 -0.1 0.0 22 43 216 237 209 242 0.78 4 11 0.00026 2 9.3 0.1 21 51 243 272 238 274 0.85 5 11 0.7 5.3e+03 -1.6 0.1 22 43 271 292 263 296 0.80 6 11 0.002 15 6.5 0.4 21 48 298 325 277 329 0.85 7 11 0.00032 2.4 9.1 0.1 21 45 326 350 322 359 0.89 8 11 0.0024 18 6.2 0.1 18 47 378 408 368 414 0.81 9 11 0.5 3.7e+03 -1.2 0.0 21 48 410 437 406 441 0.80 10 11 0.0015 11 6.9 0.1 23 45 440 462 433 466 0.89 11 11 6.2e-05 0.46 11.4 0.0 21 48 466 493 463 497 0.88
Sequence Information
- Coding Sequence
- ATGGCTGGCGAGATGACACAAATTGAATTCTCCGATATGGTCAAGGAGGGCAATTGCACCTTTTCCGATTGGCCAGACGAAGAAGATGATGAGGATGACGAGCGTATTAATGGAGCTTTCCTTACCGAGGATATGATCAAGCAGGAACCAGAGTTTATAATTGATTCAAATGACATAGAGGAGGAGCAAAAGATTCGTACCTTTCTCAAAAAGGCTATCATTGGAGACGAAGAAAGGCAAAATCTCAGCTGGCTTACTTGTATGATATGTGATGAACGTTTTTTAACGACCAAAGAACTATCTTTACACGTGCAGAAGCACGCCAAGTCCGCTCTGAAGGAGGAAGATAGCGAACAGCTGCCACCAAAGGTGTTAACTAATCGTCAGGCACCCAAAACTCCCTATACAGGATTCACCAGGCAAGAACTCTTTCAGGACTACATAAATATGAGCGTTGAGTTGGATGGAAAACCTACATACACTTGTAAGCTATGTCCCAACAAAGTATTTGCTCGGCAGGTATCCATACGGAATCATATGCGAATCCACGAGAATCCAACGTATAAAGAACGATCATGTCACGTCTGCAAGAAAACCTTTCTGCGAAGGGACACACTGTTAGTGCATTTACGCACTCACAGCAATGAACGAAAATACAAGTGTGACATTTGCGACGCTAacttctcacattccagttcaCTGGTGTCACATAAGCGCATACACACCGGCGAGAAGCCATACACCTGCAACATCTGTAAGAAGTCATTTCGCGAATCAGGCCAATTGTCTGCCCACAAGAAGACTCATTTTGAAAAGAACCTGCAATGTCCCAAGTGCGACAAAAAGTTCACTTCCAACAAGACACTACGTGTACACTGCCGAACGCATACCGACGAGCGTCCGTACTCATGCTCCTATTGCGAAAAAATGTTCCGAAGCAGCACCAGTCTGACAACACATTTGCGAGTACATACCGGTGAAAAACCATTCAAATGCGAAATATGCTCCTACGCCACCAAGCAGTCAGGATATTTGCGCACCCACATGCGGACGCACACAGGCGAGCGACCCTACAAATGTACTTACTGCGATAAGGCGTTTTCGGAGAAAAAGAGGCTCGTCACGCACACCCGCAGTCATACGGGAGAACGTCCCTACAACTGTATCTACTGCGATGCGGCTTTCGCTCGAAATGACAATCTTAAGTATCATTTGCGAACACACACCGGTGAAAAGCCGTACGAGTGTGCTGACTGTGGTAAGCGTTTCACACAAAGTACAGCGCTTAGCATTCACCAGAAGATTCACACCGGAGTCAAGCCCTACTCGTGTCCACATTGCGCCATGAAATTTCGACAAAGCGGAACTTTGGTCACTCACTTGCTAATGCACACGAACGAGAGACCGTTTAAATGCGATCTCTGCGACAAGGGTTTTAGACAGAGTGGTTTGCTGAGGAGGCACGTCATCAGTGCTCACGCAAATAAGATGTAA
- Protein Sequence
- MAGEMTQIEFSDMVKEGNCTFSDWPDEEDDEDDERINGAFLTEDMIKQEPEFIIDSNDIEEEQKIRTFLKKAIIGDEERQNLSWLTCMICDERFLTTKELSLHVQKHAKSALKEEDSEQLPPKVLTNRQAPKTPYTGFTRQELFQDYINMSVELDGKPTYTCKLCPNKVFARQVSIRNHMRIHENPTYKERSCHVCKKTFLRRDTLLVHLRTHSNERKYKCDICDANFSHSSSLVSHKRIHTGEKPYTCNICKKSFRESGQLSAHKKTHFEKNLQCPKCDKKFTSNKTLRVHCRTHTDERPYSCSYCEKMFRSSTSLTTHLRVHTGEKPFKCEICSYATKQSGYLRTHMRTHTGERPYKCTYCDKAFSEKKRLVTHTRSHTGERPYNCIYCDAAFARNDNLKYHLRTHTGEKPYECADCGKRFTQSTALSIHQKIHTGVKPYSCPHCAMKFRQSGTLVTHLLMHTNERPFKCDLCDKGFRQSGLLRRHVISAHANKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01395957;
- 90% Identity
- iTF_01300464; iTF_01301077;
- 80% Identity
- iTF_01301077;