Rros008472.1
Basic Information
- Insect
- Rhingia rostrata
- Gene Symbol
- -
- Assembly
- GCA_949824845.1
- Location
- OX463755.1:201505452-201507306[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0099 1.2 10.4 0.2 2 23 205 226 204 226 0.96 2 12 0.00033 0.041 15.1 0.2 3 23 250 270 249 270 0.97 3 12 8.5e-05 0.011 16.9 1.9 1 23 276 298 276 298 0.98 4 12 0.00016 0.02 16.0 0.4 1 23 304 327 304 327 0.97 5 12 5.2e-06 0.00066 20.7 3.1 1 23 342 364 342 364 0.98 6 12 0.19 24 6.4 4.4 2 23 377 399 376 399 0.89 7 12 0.058 7.3 8.0 0.8 2 23 406 427 405 427 0.93 8 12 0.00038 0.048 14.8 1.1 1 23 433 455 433 455 0.98 9 12 0.00025 0.031 15.4 0.4 1 20 463 482 463 483 0.96 10 12 2e-06 0.00025 22.0 0.2 1 23 493 516 493 516 0.96 11 12 0.32 40 5.7 0.1 2 23 526 548 526 548 0.89 12 12 0.12 15 7.0 4.1 3 23 555 575 554 575 0.98
Sequence Information
- Coding Sequence
- ATGAACAAACAAAAGCAAATTATTATTGGTATGTCAGAAATGGATCCTAACTACAATAACCACCAACAGCAGCATGTCTTATTTCAATTCGAGGACTCCACTCGAACCAGTGCATTCGATTTGAACCTTAATAGAGATCACCTCTCTTATATATGCGGGGCTGATGTATTAATAGGTGCTTCAGAGACTATAGAAACATACATTTCACCAGTCTTCGAAATCGGCAGTACAAATAAGGTAATCAAAACCGATTCTGATAACTTGCAGGATGTGCCAAATGAGCCTGAATATTCAATCGATATAATATCAGATACTTCACATGAGATTCTAGCTAGTACATTAGATTCTTCAGATACGATGTTGGATGctacaataaataataatttaggtAATATTCTGTCCGAGCAGTCTGGAAATAATTTTAGTAGTCCAAAAGGTGATGAGAAGAAACGAAGAAAACGAAAACAACACGAAATTTTAAGCATAAAGCCAAGAGCTCAACgaggcagaaaaaaaaagtctgaaacaAAATTCGCTGTCGAATTAGATAAAACGGATTCTCTAATGAAACATGTGAAAAAAAAGCGGGGAAGAAAACCTCTGCCGTCTTTAAAATGCAGCATATGCATGACAGAACTCAAAAACGCAAATGCTCTACAGAAGCATATGGATATTCATTCGGTAGTTAAAAGGACTAGCCCTCGAAAAGGCAGGAAACCGTTTTTTGGGATTCACAAAAAACCAGCATGCAGCATTTGCTTCGTCGAATTCACTAATACGGCTTCGCTTAAGACCCACATGTTGATTCATTCTGGTGAACGACCCTATCAGTGTGATTTTTGCGAGAAGACTTTCACCAGGAATACTATTCTAACTATTCATCGAAGACTACACACCGGAGAGAAGCCATACAAGTGTAAAATATGTTCGAGCGATTTTGTCACAAAAGAAGCTTTAGcgCGTCATGTTAGTAAGGATCATCCAGTGGCAACAGACGTAGACTTACCGAAGGAAAAGCCCTCTTTCAAATGTCAAGTTTGTGGGAAAAACCTTTGCTCAAAGTATTCCCTGCAATCACACATGAACATACATCGCCTTCTAAGTGATGGTACCGAAAAAGCTGGTGTGGAGTGCAGAACATGTAAGAAGAATTTTACCTGCCGCTACACGTTGCAACGTCACGTTTTCGAAAAACACAATTTGCGTGGTATAATTACCTGCAATGTGTGTGAAATGTCCTTTGCCAGTAAATGGGAGCACAGCAAGCATCAGGATCTGCACGCAGCTAGTAGGAAATTTCAATGTGACCTTTGTTCGATGACTTTTGATAAGAAGTTTGAACTTCTCTATCATCTACAAGTCCATGAGGCAAAGAAGAATGCATATTTCACCTGTTACCTCTGCAAGAAGGCATTCACTTCAAGGGAGAACTTTGTAGAGCACATAGAGTGCTATGTGCAAAGTGAAAAGCAGATATACTCCTGCCCTCAGTGCGATATCTCATTTTCCGATCCCCGGCAGCTTAAATTACATCTCAACGAAACCCATAAATTGCCCATAATCAGTGACCTCAATTACTGCGATATATGTAAAATTAATTATCCCAATGCCAATGCGTATTACGTGCACTTATTTGGAAAGCACGATGATGTCTATATCCTGTGCAATGAATGCAATTGTTATTTTAAGTCTAGGAGGCAATATGATGAGCATTTTATGACCCATTTTTCGtga
- Protein Sequence
- MNKQKQIIIGMSEMDPNYNNHQQQHVLFQFEDSTRTSAFDLNLNRDHLSYICGADVLIGASETIETYISPVFEIGSTNKVIKTDSDNLQDVPNEPEYSIDIISDTSHEILASTLDSSDTMLDATINNNLGNILSEQSGNNFSSPKGDEKKRRKRKQHEILSIKPRAQRGRKKKSETKFAVELDKTDSLMKHVKKKRGRKPLPSLKCSICMTELKNANALQKHMDIHSVVKRTSPRKGRKPFFGIHKKPACSICFVEFTNTASLKTHMLIHSGERPYQCDFCEKTFTRNTILTIHRRLHTGEKPYKCKICSSDFVTKEALARHVSKDHPVATDVDLPKEKPSFKCQVCGKNLCSKYSLQSHMNIHRLLSDGTEKAGVECRTCKKNFTCRYTLQRHVFEKHNLRGIITCNVCEMSFASKWEHSKHQDLHAASRKFQCDLCSMTFDKKFELLYHLQVHEAKKNAYFTCYLCKKAFTSRENFVEHIECYVQSEKQIYSCPQCDISFSDPRQLKLHLNETHKLPIISDLNYCDICKINYPNANAYYVHLFGKHDDVYILCNECNCYFKSRRQYDEHFMTHFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01300310;
- 90% Identity
- -
- 80% Identity
- -