Rcam006286.1
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- -
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000041.1:7092468-7094320[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.6 1.2e+03 1.1 0.1 12 23 176 187 166 187 0.89 2 13 0.0068 0.95 10.9 0.2 2 23 206 227 205 227 0.96 3 13 0.00082 0.11 13.8 0.1 3 23 251 271 250 271 0.97 4 13 6.5e-05 0.0091 17.2 1.4 1 23 277 299 277 299 0.98 5 13 4.9e-05 0.0069 17.6 0.4 1 23 305 328 305 328 0.97 6 13 8.6e-05 0.012 16.9 3.8 1 23 343 365 343 365 0.98 7 13 0.19 27 6.3 4.4 2 23 378 400 377 400 0.89 8 13 0.058 8.2 8.0 0.8 2 23 407 428 406 428 0.93 9 13 0.0007 0.099 14.0 0.9 1 23 434 456 434 456 0.98 10 13 0.00046 0.065 14.6 0.9 1 21 464 484 464 484 0.95 11 13 3e-06 0.00042 21.5 0.3 1 23 494 517 494 517 0.96 12 13 5 7.1e+02 1.9 0.1 2 21 527 546 527 549 0.81 13 13 0.12 17 7.0 4.1 3 23 556 576 555 576 0.98
Sequence Information
- Coding Sequence
- ATGTCTGAGCAAATTACTATTGAAACGTCGCAAATGGATCCTAACTACAATGACCACCAACAGCAGCATGTCTTATTTCAATTCGAGGACTCTACTCGAACCAATGAGTTCGATCACCTCTCTTATATATGCGGAGCTGACGTATTAATAGGTGCTTCAGAGACGATAGAAACATACATTTCACCAGTCTTCGAAATCGGTGGTACAAATAAGATAATAAAGACCGATTCTGATAACTTGCAAGATGTGCCAAATGAATCTGTATATTCAATCGATATAATATCAGATACTTCACATGAGATTCTAGCTAGTCCATTAGATTCTTCAGATACGATGTTGGATGCTACAATAAATAATAATTTAGGTAATATCCTGTCTGAGCAGACTGGGAATAATTTTAGTAGTCCAAAGTGTGATCAAAAGAAACCAAGGAAAAGAAAACAACATGAGATCATAAGCATAAGGCCAAGAGCTAAACGAGGCAGAAAACCAAAGTTTGAAACAAAATCCGCTTTGAAATTAGATAAATCGGATTCTCTAAAGAAACATGTGTCGAATCACGCAGAAGAAAATAAGCTGAAAAAAAAGCGGGGAAGAAAACCGCTGCCGCCTTTAAAATGCAGCATCTGCATGACAGAACTCAAAAATGCAAAGGCTCTACAGAAGCATATGGACATTCATTCGGAAGTGAAAAAGACTAGCCCACGGAAAGGCAGGAAACCGTTTTTTGGGATTCACAAAAAACCAGCATGCAGCATTTGCTTGGTCGAATTCACCAATACTGCTTCGCTTAAGACCCACATGTTGATTCATTCTGGTGAGCGACCATTTCAGTGTGATTTATGCGAGAAGACATTCACCAGGAACACGATACTAACGATTCATCGAAGACTACATACGGGAGAGAAGCCTTACAAGTGTAAGATATGTTCAAGCGATTTTGTCACAAAGGAAGCGTTAGCGCGTCATATTAGTAAGGATCATCCAGTGGCATCAGATGTAGACTCGCCGAAGGAAAAGCCCTCTTTCAAATGTCAAGTTTGCGAGAGAAAACTTTGCTCAAAGTATTCCCTGCAATCACACATGAACATACATCGGCTGCAAAGTGATGGCACCGAAAAAGCTGGCGTGGAGTGCAGAACTTGTAAGAAGAATTTCACGTGCCGCTACACGTTGCAACGTCACGTTTTCGAGAAACACAATTTGCGCGGTATAATCACCTGCAATGTTTGCGAAATGTCATTTGCCAGCAAATGGGAGCACAGCAAGCATCAGGATCTGCACGCAGCTAGTAGGAAATTTCAATGTGACCTGTGTTCGATGACTTTTGGCAAGAAGTTTGAGCTACTCTATCATCTACAAGTCCATGAGGCAAAGAAGAATGCATGTTTCAGCTGTTACCTCTGCAAGAAGTCGTTCTCTTCAAGGGAAAGCTTTGTAGACCATATACAGTGCTATGTGCAAAGTGAAATGCAGATATATTCCTGCCCGCAGTGCAATATCTCATTTTCCGATCCCAGGCAGCTTAAATTACATCTCAACGAAACCCATAAATTGCCCATAATCAGTGACCTCAATTACTGCGATATATGTAAAATTAATTATCCCGATGGTAATGCTTACTACGAGCACTTGTTTGGAAAGCACGATGACGTCTATATTCTGTGCAATGAATGTAATTGTTATTTTAAGTCTAGGAGGCAATATGATGAGCATTTTATGACGCATTTTTCGTGA
- Protein Sequence
- MSEQITIETSQMDPNYNDHQQQHVLFQFEDSTRTNEFDHLSYICGADVLIGASETIETYISPVFEIGGTNKIIKTDSDNLQDVPNESVYSIDIISDTSHEILASPLDSSDTMLDATINNNLGNILSEQTGNNFSSPKCDQKKPRKRKQHEIISIRPRAKRGRKPKFETKSALKLDKSDSLKKHVSNHAEENKLKKKRGRKPLPPLKCSICMTELKNAKALQKHMDIHSEVKKTSPRKGRKPFFGIHKKPACSICLVEFTNTASLKTHMLIHSGERPFQCDLCEKTFTRNTILTIHRRLHTGEKPYKCKICSSDFVTKEALARHISKDHPVASDVDSPKEKPSFKCQVCERKLCSKYSLQSHMNIHRLQSDGTEKAGVECRTCKKNFTCRYTLQRHVFEKHNLRGIITCNVCEMSFASKWEHSKHQDLHAASRKFQCDLCSMTFGKKFELLYHLQVHEAKKNACFSCYLCKKSFSSRESFVDHIQCYVQSEMQIYSCPQCNISFSDPRQLKLHLNETHKLPIISDLNYCDICKINYPDGNAYYEHLFGKHDDVYILCNECNCYFKSRRQYDEHFMTHFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01301128;
- 90% Identity
- -
- 80% Identity
- -