Rros010405.1
Basic Information
- Insect
- Rhingia rostrata
- Gene Symbol
- PEG3
- Assembly
- GCA_949824845.1
- Location
- OX463756.1:47149737-47153425[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.5e-05 0.0094 17.1 0.8 1 23 153 175 153 175 0.95 2 15 0.00067 0.085 14.1 3.9 1 23 181 203 181 203 0.97 3 15 2e-05 0.0025 18.9 0.4 1 23 311 333 311 333 0.98 4 15 0.0052 0.66 11.3 0.2 1 23 339 361 339 361 0.98 5 15 4.9e-05 0.0061 17.7 6.7 1 23 389 411 389 411 0.98 6 15 0.0066 0.83 10.9 0.3 1 23 422 444 422 444 0.94 7 15 0.0017 0.21 12.8 0.6 1 23 450 473 450 473 0.96 8 15 0.21 26 6.2 0.4 5 19 484 498 481 499 0.91 9 15 6.1e-06 0.00077 20.5 4.5 1 23 508 530 508 530 0.97 10 15 0.011 1.3 10.3 0.5 2 23 536 557 535 557 0.96 11 15 7.3e-06 0.00092 20.3 0.3 1 23 566 588 566 588 0.98 12 15 0.00082 0.1 13.8 0.1 3 23 596 616 594 616 0.97 13 15 4.4e-05 0.0056 17.8 0.5 1 23 622 644 622 645 0.95 14 15 4.2 5.3e+02 2.1 1.6 1 23 655 677 655 677 0.93 15 15 0.036 4.5 8.6 0.0 1 20 1088 1107 1088 1110 0.93
Sequence Information
- Coding Sequence
- ATGGACACTCAAACGTACGGAATTCCATCGTGGGTTCCGCAAATGGAGCGTGGCAATGCCAGTGATGATAATCAGGGAATCATAATCGGTGACTCGGAAGGTGATAGTGGCAACCACACGGACTACCTAGTGCACGAAGTGCCAACAAATCTCGACCAAATCGCAGCGGAAAACTTAATTTTCATGGCTCGCGATGGTCAAATGGAAATCATCCATGGCAACAGTAATGAGATTGATGGAAATGATGATAGTGGCATCGTCAACTTTCATGACGACTATGCCGAAACCCAAATGGTAACAGAGGAGGTGATTACCGATGATTGGGTGCAGCATCAAGGGGAGGAGAGAGTGGAGATACCTGCAGATCAAATCTGTGGTTCGCTTTCGAATGTCCGCGCTGATGATATTGAAGTGCCTTTGCCAACTGTGCAGGATGAGTACACAGCGTTACGACCGTATCCATGTGATTTTTGCAGCCGACGATTTCGCAAGAAGGGCAGTCTTATGAACCACATGGTGGCACATCAAAACGATCGGCCTCACGTGTGTAAATTGTGTGGATCGCGTTTCTGTCGCCGAACGGACCTCATCAACCACTTGAAAGCTCATGCCGAGGCGTCAGAATATCAGGACAATGAATACTTTGAGCCGCAGAGAAATTCGCCGCCCAATGATCACTACTACGATCAGGACTGGTCTACTGTTGAGGTAAAACCAGCGAAAAAATCACGCAATAAGCGTGCGTTAAAAGTGCCTAAGGAAGAGAATTATACCATTGACGAGACAATACGGCAGGAACAGCAACATGAACAATATGGTCAGGAACAATCTCAGCACCATCAACAAGCACAACACTATGTGGAAGAGGTCATCACGGAACaggataccaaaaaaatggatCGTTTTCCGATAATCGATGAGAATAAACCTTTCGTTTGTCAACAATGCGGTCTGTCCTTTGCCCGAGAAAAGGCAATGCTATCGCATATGAAGACACATCGCACTGATTCCGCCTTTGAATGTGCCACGTGCAATGAGATGTTTTGGGATGCAAACACTCTGCAAGAGCACCAAAAGTCGCACCAATTCGAGGAGAGCAGCTCAGAATACGAACCGGACATCGATAATGAAAGCGGTTCCGAGTCAGAATACAAATACGGTGAATTCTATTGCCACCAATGTGGCATGTCTTTTCATCGCCAAGACCTGTTGCGTCGCCATACCAAGTCGCACATTAAGAAGGAGGTCTTCGATAAAGACCAACATTGTTGCAACACCTGCGGTGAAACGTTTGCTGAGGCGTTGGACCTACTGGCGCATGCTGAAATTCATGCGAGATATCCGCCGTTTAAGTGTGTTCTATGTGGAGAAACTTTCTTTGAGGAGTCCACTATTAAACGTCACCTGAACAACCTTCATACAGCCGATATGACTACAAATTCATGTATCCTCTGCGGAAAAGAATGCCGCGATCGCAAAGCGCTTATGAAACACGCCTGGGATCACTCTCGAGAAAAGTGTCATTCGTGTCCGAAGTGTGGGAAGAGTTTCCACAACAAAGCCCGCCTGAAGCGTCACATGGCTTCGCACCGAGACAAGTCGGTGGTTTGCAATGTGTGCAACGAGGAGTTTCCCGATGGGAGGTCTCTCTCAAACCATCGTCATTCGCATAGTGTCAACGCGTCGGGGAAACTCTTTCCTTGTAACGAATGTGGTAAGACTTTTGGATCAAGGAGTTCGCAACAGATCCATGTGCGGATACACACAGGCGAACGACCGTACGGATGCCGGTACTGTTGGAAAGCATTCGCCGATGGTGGGACTCTTCGGAAACATGAACGTATTCACACAGGTGAAAAGCCTTACGCTTGTTCCGTCTGTCCACGTGCTTTTAATCAGAGAGTTGTGCTGAGGGAGCACATACGATCGCATCACTCCGGCCTGGATACAAAACGTGGAACTTATTATTGTTCAGTGTGCTGCAGTGAGTTGCCTTCTTCCTCGGAGCTGATTCAGCATTTGATACACCACAGCGATATCAATACCGCTATGCAAAGACAACCagtgacGGGTCCCCGGAAGTACAAACGTCGTCGAAAGCTGAAACCGCACGAGATCGATCGCCTTCGTACGGAGAACAAGGCCAACAGCAGTGACATCGATATCTCCGACTTTGACATGGATAATGTGGATGATCTTCTTGGCATTCCCACTTCAGCGACAACAAGCAACACGAACAAACACAATCGAGACACAACTGCCACGACAGCATCGCAGCATTCCTCGTCGGCAGCTGTTTCATTGGAAACACAAAGTGATAGTTTAAAGAGACGCTATAACTCCACAGGAAGCTCATCAGAGAAGCTTTCCAATAATTGGCACACCAAGCTAATAAACTCCACTAGTGATGACACATACAAGTCGTTGCTCTCCAATCTCGAGAACACACTTCAGAGTATTGATACTCTGGTAGTGAGTAACCCGTCTTCCTATGGAAACACTGTCACAGAAACATCAACACCACTAGCAACAGCAATTGTAATTCCGAAAACGCCAAAGACTCCACGCCGAAAGAACGCATCCACGTCGAAAACCTCCAGTCGGCCCAAGATGATTCACACCGAAAAGACACGCTCATCTAACGAAAACGGTAAAAGAAAGTCTAAAACCTTTGTGACACGTACTGAACCTGCACATTTGGATATGTTTGCACAGCGATCAAAGCATACAACTCATGCAAATGATTACGAAATCACAACTCCGGACAAATACCCGCCAAATCAGATTCAATCTAGTCCCATTCACATCAAACAAGAGATTGTCTGCACACGCAGTGAGCTGTACGATGCGCAACTACTACTAGAGGCCACATCCGCACGTAGGGAGCTAGAAAACTACAATCCCGCTATAGTCAACGATCTGGAGGAGATCTTACGATCGCCAGACAAGTCCAAGTCACCCCGCCGACGAACAATCAGTGATCGAACCGATGACGAGATCAAAACTGAGCCCTACTCACCAAATCAAcagaattttgattttgtacgACGTTCTACCCGGCCCAGGCGGCCAGTGGCAAATCGAAAGTATCTTGGATATGAGACAGAGCTGCCAGCACCAAAGCCAAAGTCCAGGACAGAAAAGCGAACAGTCGAGAGTAAACCGCTGATCAGTAATGCGGTAACTAGTCTACCACCAATCAAGTCGTCGCCAATATCGTCACCACCGCCAATACCTGCACCTGTGCGCAAGCAGCGATATTTCGAATGTGAAATGTGTTCGGCTATATTCCCCGATCGAGCGCAGCTATTAGATCATGTACCCATCCATATATAA
- Protein Sequence
- MDTQTYGIPSWVPQMERGNASDDNQGIIIGDSEGDSGNHTDYLVHEVPTNLDQIAAENLIFMARDGQMEIIHGNSNEIDGNDDSGIVNFHDDYAETQMVTEEVITDDWVQHQGEERVEIPADQICGSLSNVRADDIEVPLPTVQDEYTALRPYPCDFCSRRFRKKGSLMNHMVAHQNDRPHVCKLCGSRFCRRTDLINHLKAHAEASEYQDNEYFEPQRNSPPNDHYYDQDWSTVEVKPAKKSRNKRALKVPKEENYTIDETIRQEQQHEQYGQEQSQHHQQAQHYVEEVITEQDTKKMDRFPIIDENKPFVCQQCGLSFAREKAMLSHMKTHRTDSAFECATCNEMFWDANTLQEHQKSHQFEESSSEYEPDIDNESGSESEYKYGEFYCHQCGMSFHRQDLLRRHTKSHIKKEVFDKDQHCCNTCGETFAEALDLLAHAEIHARYPPFKCVLCGETFFEESTIKRHLNNLHTADMTTNSCILCGKECRDRKALMKHAWDHSREKCHSCPKCGKSFHNKARLKRHMASHRDKSVVCNVCNEEFPDGRSLSNHRHSHSVNASGKLFPCNECGKTFGSRSSQQIHVRIHTGERPYGCRYCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSGLDTKRGTYYCSVCCSELPSSSELIQHLIHHSDINTAMQRQPVTGPRKYKRRRKLKPHEIDRLRTENKANSSDIDISDFDMDNVDDLLGIPTSATTSNTNKHNRDTTATTASQHSSSAAVSLETQSDSLKRRYNSTGSSSEKLSNNWHTKLINSTSDDTYKSLLSNLENTLQSIDTLVVSNPSSYGNTVTETSTPLATAIVIPKTPKTPRRKNASTSKTSSRPKMIHTEKTRSSNENGKRKSKTFVTRTEPAHLDMFAQRSKHTTHANDYEITTPDKYPPNQIQSSPIHIKQEIVCTRSELYDAQLLLEATSARRELENYNPAIVNDLEEILRSPDKSKSPRRRTISDRTDDEIKTEPYSPNQQNFDFVRRSTRPRRPVANRKYLGYETELPAPKPKSRTEKRTVESKPLISNAVTSLPPIKSSPISSPPPIPAPVRKQRYFECEMCSAIFPDRAQLLDHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00389816;
- 90% Identity
- iTF_01300239;
- 80% Identity
- -