Basic Information

Insect: Rhingia rostrata
Gene Symbol: -
Assembly: GCA_949824845.1
Location: OX463755.1:201490068-201502760[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 6.1e-05 0.0077 17.3 1.6 2 23 397 418 396 418 0.97

2 16 0.00016 0.02 16.0 1.6 1 23 424 446 424 446 0.98

3 16 2.2e-05 0.0028 18.7 0.3 1 23 452 475 452 475 0.98

4 16 3.5e-05 0.0045 18.1 3.5 1 23 490 512 490 512 0.98

5 16 1.9e-05 0.0023 19.0 0.5 1 23 545 567 545 567 0.97

6 16 7.5e-05 0.0095 17.1 1.8 1 23 573 595 573 595 0.98

7 16 8.2e-06 0.001 20.1 1.0 2 23 698 719 697 719 0.97

8 16 4.7e-06 0.00059 20.8 3.1 1 23 725 747 725 747 0.98

9 16 3.4e-05 0.0043 18.1 0.7 1 23 753 776 753 776 0.98

10 16 0.00018 0.023 15.8 1.2 1 23 787 809 787 809 0.98

11 16 0.00076 0.096 13.9 0.6 1 23 821 843 821 843 0.98

12 16 0.017 2.1 9.7 1.8 1 23 849 871 849 871 0.97

13 16 2.2e-05 0.0028 18.7 0.3 2 23 877 899 876 899 0.95

14 16 0.082 10 7.5 0.7 1 23 907 930 907 930 0.95

15 16 0.0078 0.98 10.7 0.6 3 23 940 961 939 961 0.93

16 16 0.00017 0.022 15.9 1.3 2 23 967 988 966 988 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	6.1e-05	0.0077	17.3	1.6	2	23	397	418	396	418	0.97
2	16	0.00016	0.02	16.0	1.6	1	23	424	446	424	446	0.98
3	16	2.2e-05	0.0028	18.7	0.3	1	23	452	475	452	475	0.98
4	16	3.5e-05	0.0045	18.1	3.5	1	23	490	512	490	512	0.98
5	16	1.9e-05	0.0023	19.0	0.5	1	23	545	567	545	567	0.97
6	16	7.5e-05	0.0095	17.1	1.8	1	23	573	595	573	595	0.98
7	16	8.2e-06	0.001	20.1	1.0	2	23	698	719	697	719	0.97
8	16	4.7e-06	0.00059	20.8	3.1	1	23	725	747	725	747	0.98
9	16	3.4e-05	0.0043	18.1	0.7	1	23	753	776	753	776	0.98
10	16	0.00018	0.023	15.8	1.2	1	23	787	809	787	809	0.98
11	16	0.00076	0.096	13.9	0.6	1	23	821	843	821	843	0.98
12	16	0.017	2.1	9.7	1.8	1	23	849	871	849	871	0.97
13	16	2.2e-05	0.0028	18.7	0.3	2	23	877	899	876	899	0.95
14	16	0.082	10	7.5	0.7	1	23	907	930	907	930	0.95
15	16	0.0078	0.98	10.7	0.6	3	23	940	961	939	961	0.93
16	16	0.00017	0.022	15.9	1.3	2	23	967	988	966	988	0.97

Sequence Information

Coding Sequence: ATGTCTGTCAAGCTAGACGACACTGTGTGTCGTGTGTGTTTGAGTTCCTCCGGCAACATAGTCATATTTGATGGATGCGGGAAAGATGACCAATTTCGTTATTGTACTTCTTTAGAGGCCGCCATTGACGATGGGCTCCCGTCAAAGCTCTGCAAAAAGTGTAATGACCACTTGAAAGTCGCCTACGATTTTCGATTCCAGGCGATTTATGCCGAAAAATACTTCCGAAAAACCATATTCCTGCCGTTGcttaaaaaggaaacaaatggGGAGTCTCTGGCTATCTCAGAGGAGCGCAACTGTTCTGATGAACTGGATGAGAACATGGCGGAGATTGATATGCTGCTTGCTATACACACAGAAGCTGCTGAGGAAGCTGGTGATGATGACAAGGACGATTTGAATAATTCAGGGTtttacgatgatgatgatgagagtGCAAACGAACATGAAAAGGAGGTAGAAATTATTGGCATGGAGACATTTGAGAAGGAACAAAAGGAGCAGAAGGTAAAAATTGAATTGGCCAGCGTTTCACTGCCGCAGGTGTCATCAACAGTTGGTAATACGAGTTATGTGTCGTCGATTCCGTTGATGGACTCACCAATAGAGTCAGCACAGTTGACAACAAATAATAACTGTATTGTGTCAAATGTCGATATAAGCACTCTTCAGCAATACACTTCTTCAGGTCTATATACTGCACAACCAGTGCAGGATGTGCGCATGGAACAACATGATGTTGACAAGTCCCTACACTTAGAAATTCTTCCAGAAATGAAGAATGATCCATCCACGTACGAATATGGTGCAAACGTAGCTGTTTCCGACACTTATGAGACCTTCAATGTACCGACGCATCTGCAAACTGCATACCAACAGCCCATGTCTATGCATCTGCAATACGAGCAATCTGCTGCAGCTTTGCCCTTACAAGAACCGGCGTCAAGTGCTACGAACTATGACTTTACATATCAACCGCAATTCCCTCCATATTCTGCTCAAGCCACAGAAATATCTTCAGCTATTAAACAACCAACACTTTCCCAGGAGTTATCAAATCCGATCGATGAAGCTGTGAGGAGCGAAGTTCAACCCGCACCTAACAAAAAGACTGAAAATCAAGAGCGGCTGGCggtcaaacaaaaaaagattaagCGTGAGAATCACAGTCGCCGCGACAAGATCGAGTGCAATATTTGCGGCAGCACCTTCACACACCTGAATTCGCTGAAAACACATCTCCTTAAACACTCTGGCGAGAAGCCGTTTAAATGTGAGTTCTGCTACAAAGCCTTCGCTAGAAAAACTGTACTCAACATCCATCGGCGACTGCACACCGGGGAGAAGCCCTATAAGTGCTCCCTGTGCCCAAGTGCATTTGTGACTAAAGAAGCTCTTACGCGCCATCTGCAAAAAGACCATGAACAGGAGGTCGGGGCGAATTTCCGCAAGGACAAGGTATCCTACATTTGTTCAATATGCAACAAGTCCCGATGTTCGAAGTACTCTCTAGCGTCTCATATGAAGACGCACTCCAGCGACTCCAAAGCGCGTAGGAAGGTTGTCCgacgaaaaagagaaaaatccGCTGGTTGCAATATTACAGTGTCGAGCAGCGTATCTTTTAAGTACTCCTGCAAGATCTGTCAGAAAGGTTTCTCCAACAAATGGGAACTGAGCACTCATGCCGAGTCCCACGacataaacaaaacatttgaaTGCGATGTCTGTCAGCGCACATTCGAAAAGAAGTTCCAGTTGTTGTATCACCTTCAGACGCACGATGGCGGTGATGAGCTCGTGAAAGCCAGGGTACAACCAAGTATGGATAAATCCGCCCCCAAAAAGACTGACGAGGCAGCAGATCGAAGTCAACCGCCAACgcagagaaaattgaaaaaacatCTTCCCACGAGGAAACGACGAAAAGTGAAAACGAAAATCCTCAATGACAGCGACGAGGCAGATGATATCCAGGAAGAAGACGAAATAGATGATAAAAACGACAAGGATTTCAAACTCACAAAGAAAAAGATAACTCGTGCACAGCGGGAGAACCTTAAATTACTACGAGCAAGCAGTAAAATCGAGTGCCACATTTGCGAAGCAGTATTCACTCACCCAACTTCGCTGAAGACTCATATGTTGGTGCATTCCGGTGAGCGGCCATTCAAGTGTGACCACTGTGACAAGTCATTTGCAAGAAAAACCGTTCTCAACATCCACCGACGTCTGCACACCGGAGAGAAGCCATACAAGTGTCCTCTTTGCGACAGCGCCTGCGTCACAAAAGACGCGTTAATGCGTCACATGTCAAAGGACCACGACGATGACAGAGAAGCCGATAGAATTAAATTTACATGCGGCATTTGTCATAAGGCCATGGGTACAAAGTACTCGTTGCAAGCCCACATGAAACTCCATGAACAGAACTCGACGCCACAAACGGAAGTAAAATTTTCCTGCAACACCTGCACCGAGCTCTTTGAAAACAAGGCTGACTACTCAAAGCACATGGAGGTGCACGATTCTCATCGGAATTTCCAATGTGACATTTGTCAGGCAACATTTGAAAAGAAATTCAAGCTACTCTTTCATCTGCAGACACACAAGATTGAGGATTTGCCGTGCAAAAAGTGCGGCGAGACTTTCACGATAAGGGAAAACCTCATTCAACACATCAAACTACAACATATGGATCCTCAGAATATGGACTTTCAGTGTCCGCACTGCAATGTTGGACAGTACGATACGCGAGACTTGAAACTGCACATGTTGAACGTGCACGATGTCGTCATGGGTGGCTTGAATGCTTGCGATCTATGCAGCGAGAGTTATTCCACTGCAGCTGAGTACTACAAACACATGCACGACAAACATGACACAATCAGCAAAACCTGCAACGAATGCGATAAGTATTTCGACTCAAGAAAAGCCTTTGATAAGCACATACTGACGCACTACATGTAG
Protein Sequence: MSVKLDDTVCRVCLSSSGNIVIFDGCGKDDQFRYCTSLEAAIDDGLPSKLCKKCNDHLKVAYDFRFQAIYAEKYFRKTIFLPLLKKETNGESLAISEERNCSDELDENMAEIDMLLAIHTEAAEEAGDDDKDDLNNSGFYDDDDESANEHEKEVEIIGMETFEKEQKEQKVKIELASVSLPQVSSTVGNTSYVSSIPLMDSPIESAQLTTNNNCIVSNVDISTLQQYTSSGLYTAQPVQDVRMEQHDVDKSLHLEILPEMKNDPSTYEYGANVAVSDTYETFNVPTHLQTAYQQPMSMHLQYEQSAAALPLQEPASSATNYDFTYQPQFPPYSAQATEISSAIKQPTLSQELSNPIDEAVRSEVQPAPNKKTENQERLAVKQKKIKRENHSRRDKIECNICGSTFTHLNSLKTHLLKHSGEKPFKCEFCYKAFARKTVLNIHRRLHTGEKPYKCSLCPSAFVTKEALTRHLQKDHEQEVGANFRKDKVSYICSICNKSRCSKYSLASHMKTHSSDSKARRKVVRRKREKSAGCNITVSSSVSFKYSCKICQKGFSNKWELSTHAESHDINKTFECDVCQRTFEKKFQLLYHLQTHDGGDELVKARVQPSMDKSAPKKTDEAADRSQPPTQRKLKKHLPTRKRRKVKTKILNDSDEADDIQEEDEIDDKNDKDFKLTKKKITRAQRENLKLLRASSKIECHICEAVFTHPTSLKTHMLVHSGERPFKCDHCDKSFARKTVLNIHRRLHTGEKPYKCPLCDSACVTKDALMRHMSKDHDDDREADRIKFTCGICHKAMGTKYSLQAHMKLHEQNSTPQTEVKFSCNTCTELFENKADYSKHMEVHDSHRNFQCDICQATFEKKFKLLFHLQTHKIEDLPCKKCGETFTIRENLIQHIKLQHMDPQNMDFQCPHCNVGQYDTRDLKLHMLNVHDVVMGGLNACDLCSESYSTAAEYYKHMHDKHDTISKTCNECDKYFDSRKAFDKHILTHYM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01300232;
90% Identity: iTF_01300232;
80% Identity: -