Basic Information

Insect: Rhingia campestris
Gene Symbol: -
Assembly: GCA_932526435.1
Location: CAKOBE010000041.1:7086439-7090183[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00016 0.023 16.0 1.1 2 23 396 417 395 417 0.97

2 16 0.00016 0.022 16.0 1.6 1 23 423 445 423 445 0.98

3 16 9.9e-05 0.014 16.7 0.3 1 23 451 474 451 474 0.98

4 16 3.5e-05 0.0049 18.1 3.5 1 23 489 511 489 511 0.98

5 16 1.8e-05 0.0026 19.0 0.5 1 23 544 566 544 566 0.97

6 16 7.5e-05 0.011 17.1 1.8 1 23 572 594 572 594 0.98

7 16 8.1e-06 0.0011 20.1 1.0 2 23 697 718 696 718 0.97

8 16 4.7e-06 0.00066 20.8 3.1 1 23 724 746 724 746 0.98

9 16 3.4e-05 0.0048 18.1 0.7 1 23 752 775 752 775 0.98

10 16 0.00018 0.025 15.9 1.2 1 23 786 808 786 808 0.98

11 16 0.00012 0.016 16.5 2.6 1 23 820 842 820 842 0.98

12 16 0.016 2.3 9.7 1.8 1 23 848 870 848 870 0.97

13 16 2.2e-05 0.0031 18.7 0.3 2 23 876 898 875 898 0.95

14 16 0.081 11 7.5 0.7 1 23 906 929 906 929 0.95

15 16 0.00088 0.12 13.7 0.4 3 23 939 960 938 960 0.93

16 16 0.00017 0.024 15.9 1.3 2 23 966 987 965 987 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00016	0.023	16.0	1.1	2	23	396	417	395	417	0.97
2	16	0.00016	0.022	16.0	1.6	1	23	423	445	423	445	0.98
3	16	9.9e-05	0.014	16.7	0.3	1	23	451	474	451	474	0.98
4	16	3.5e-05	0.0049	18.1	3.5	1	23	489	511	489	511	0.98
5	16	1.8e-05	0.0026	19.0	0.5	1	23	544	566	544	566	0.97
6	16	7.5e-05	0.011	17.1	1.8	1	23	572	594	572	594	0.98
7	16	8.1e-06	0.0011	20.1	1.0	2	23	697	718	696	718	0.97
8	16	4.7e-06	0.00066	20.8	3.1	1	23	724	746	724	746	0.98
9	16	3.4e-05	0.0048	18.1	0.7	1	23	752	775	752	775	0.98
10	16	0.00018	0.025	15.9	1.2	1	23	786	808	786	808	0.98
11	16	0.00012	0.016	16.5	2.6	1	23	820	842	820	842	0.98
12	16	0.016	2.3	9.7	1.8	1	23	848	870	848	870	0.97
13	16	2.2e-05	0.0031	18.7	0.3	2	23	876	898	875	898	0.95
14	16	0.081	11	7.5	0.7	1	23	906	929	906	929	0.95
15	16	0.00088	0.12	13.7	0.4	3	23	939	960	938	960	0.93
16	16	0.00017	0.024	15.9	1.3	2	23	966	987	965	987	0.97

Sequence Information

Coding Sequence: ATGTCTGTCAAACTAGACGACACTGTGTGTCGCGTATGTTTGAGTTCCTCCGGCAACATAGCCATATTCGATGGATGCGGGAAAGATGACCAATTTCGTTATTGCACTTCCCTAGAGGCCGCCGTTGACGATGGACTCCCGTCAAAGCTCTGCAAGAAGTGTAATGACCACTTGAAAGTCGCCTACGATTTTCGATTCCAGGCGATCTATGCCGAGAAATACTTTAGAAAAACCATATTCCTGCCGTTGCTTAAAAAAGAAACAAATGGGGAGTCTCTGGCTATGTCAGATGAGCACAACTGTTCTGATGAACTGGATGAGAATATGGCGGAGATTGATATGTTGCTTGCAATACATACGGAAGCCGTTGAGGAAGCTGGTGATGATGACAACGACGATATTAATAATTCAGGGTTTTATGATGATGATGAGAGTGCCTACGAACATGAGAAGGAGGTGGAAGTCATTGGCATGGAGACATTTGAGAAGGAACAGAAGGAGCAGAAGGTAAAAATTGAAATGGCCAGCGTTCCACTGCCGCAGGTGTCATCAACCGTTGGTAATACGAGTTATGTGTCGTCGACTCCTTTGGTGGATTTGCCAATAGATTCAGCACAGTTGGCAACAAATAATAATGTTGTTGTGTCAAATGTCAATATAAGCACACTTCAGCAATACACTTCTTCAGGCCAATATACTGCACAACCAGTGCAGGATGTGCGCTTGGAACAACATGATGTTCACAAGTCCCTACACTTGGAAATTCTTCCTGAAATGAAGAATGATCCAACCACGTACGACTATGGTGCAAGCGTAGCTGTTTCCGACACTTATGAGGCTTACAATGTACCGACGCACCTACACACGGCATACCAACAGCCCATGTCTATGCATCTGCAATACGAGCAGACATCTGCAACCTTGCCTTTACAAGAACCCGCTGCAAGTGCAACCAACTTTGACTTTTCGTATCAACCGCAATTCCCTCCATATACTGCCCAAGCTACAGAATTATCACCAGCTATCGAAGCGCCACCACCTACCCAGAAGCTATCAAATCCGATTGATGAAGCTATGAGTAGTGAAGTTCAACCGGAACCTAACACAAAGACTGAAAATCAAGAGCTGCTGGCGGCCAAACCGAAGAAGATTAAGCGTGACAGTCACAGTCGCCGCGACAAGATCGAATGCAATATTTGCGGCAGCATCTTCACACATTTAAATTCGCTGAAAACACATCTCCTTAAGCACTCTGGCGAAAAGCCCTTTAAGTGTGAGTTCTGCTACAAAGCCTTCGCCAGAAAAACTGTACTCAACATCCATCGGCGACTGCATACCGGGGAGAAGCCCTATAAGTGCTCACTGTGTCCTAGTGCATATGTGACAAAAGAAGCTCTTACGCGTCATCTGCAAAAGGATCATGAACAGGAGGTGGGGGCGAATTTCCGCAAGGACAAGGTATCCTACATTTGTTCAATCTGCAACAAATCCCGGTGTTCGAAGTACTCCCTAGCGTCTCATATGAAGACGCACGCCAGCGACTCCAAAGCGCGTCGGAAGGTTGTCCGACGAAAAAGAGAAAAATCCGCTGGTTGCAATATTACAGTGTCGAGCAGTGTGCCTTTTAAGTATTCGTGCAAAATCTGTCAGAAGGGTTTCTCCAACAAATGGGAACTGAGCACTCATGCAGAGTCCCACGACATAAACAAAACATTTGAGTGCGATGTCTGTCAGCGCACATTCGAAAAGAAGTTCCAGTTGTTGTACCACCTTCAAACGCACGACGGCGGCGATGAGCTCGTGAAAGCCAGGGTACAACCAAGTACGGATAAATCCGCACCAAAAAAGACTGACGAGGCAGCAGATCGAAGTCAACCACCAACAGAGAGAAAATTGAAAAAAAATCTTCCCGCTAGGAAACGACGAAAAGTGAAACCGAAAATCATCAATGACAGCGACGAGGCAGGTGATATCCAGGAAGAAGATGAAATAGATGATGACAACGACAAGGATTTCAAACTCACAAAAAAGAAGATAACTCGTGCACAGCGGGAGAACCTTAAATTACTGAGAGCAAGCAGTAAAATcgagtgccacatttgcgaagcagtgttcactcacccaacctcgctgaagactcacatgttggtgcattccggtgagcggccattcaagtgcgaccactgtgacaagtcatttgcaaggaaaaccgttctcaacatccaccgacgactgcacaccggagagaagccatacaagtgtcctctttgtgacagcgcctgcgtcaCAAAAGACGCGTTAATGCGTCACATGTCAAAGGACCATGACGACGACAGAGAAGCCGATAGAATTAAGTTTACATGCGGCATTTGCCATAAGGCCATGGGCACCAAGTACTCGTTGCAAGCCCACATGAAACTCCATGAACAGCACTCGACGCCACAAACGGAAATGACATTTTCCTGCAACACTTGCACAGAGTGCTTTGACAACAAGGCTGACTACTCAAAGCACATGGAGGTGCACGATTCTCATCGCAATTTCCAATGTGACATTTGTCAGGCAACGTTTGAGAAGAAATTCAAGCTACTCTTTCACCTGCAGACGCACAAGATTGAGGATTTGCCGTGCAAAAAGTGCGGCGAGACGTTCACGATAAGGGAAAACCTCATCCAACACATCAAACTACAACATATGGATCCTCAGAATATGGACTTTCAGTGTCCGCACTGTAATGTAGGACAGTACGATACGCGCGATTTGAAACTGCACATGTTAAATGTGCATGATGTCGTCATGGGTGGCTTGAATGCTTGCGATCTATGCGGCGAGAGCTATTCCACCGCAGCCGAGTACTACAAACATATGCACGACAAACATGACACAATCAGCAAAACCTGCAACGAGTGCGATAAGTATTTCGACTCAAGAAAAGCTTTTGATAAGCACATACTGACGCACTACATGTAG
Protein Sequence: MSVKLDDTVCRVCLSSSGNIAIFDGCGKDDQFRYCTSLEAAVDDGLPSKLCKKCNDHLKVAYDFRFQAIYAEKYFRKTIFLPLLKKETNGESLAMSDEHNCSDELDENMAEIDMLLAIHTEAVEEAGDDDNDDINNSGFYDDDESAYEHEKEVEVIGMETFEKEQKEQKVKIEMASVPLPQVSSTVGNTSYVSSTPLVDLPIDSAQLATNNNVVVSNVNISTLQQYTSSGQYTAQPVQDVRLEQHDVHKSLHLEILPEMKNDPTTYDYGASVAVSDTYEAYNVPTHLHTAYQQPMSMHLQYEQTSATLPLQEPAASATNFDFSYQPQFPPYTAQATELSPAIEAPPPTQKLSNPIDEAMSSEVQPEPNTKTENQELLAAKPKKIKRDSHSRRDKIECNICGSIFTHLNSLKTHLLKHSGEKPFKCEFCYKAFARKTVLNIHRRLHTGEKPYKCSLCPSAYVTKEALTRHLQKDHEQEVGANFRKDKVSYICSICNKSRCSKYSLASHMKTHASDSKARRKVVRRKREKSAGCNITVSSSVPFKYSCKICQKGFSNKWELSTHAESHDINKTFECDVCQRTFEKKFQLLYHLQTHDGGDELVKARVQPSTDKSAPKKTDEAADRSQPPTERKLKKNLPARKRRKVKPKIINDSDEAGDIQEEDEIDDDNDKDFKLTKKKITRAQRENLKLLRASSKIECHICEAVFTHPTSLKTHMLVHSGERPFKCDHCDKSFARKTVLNIHRRLHTGEKPYKCPLCDSACVTKDALMRHMSKDHDDDREADRIKFTCGICHKAMGTKYSLQAHMKLHEQHSTPQTEMTFSCNTCTECFDNKADYSKHMEVHDSHRNFQCDICQATFEKKFKLLFHLQTHKIEDLPCKKCGETFTIRENLIQHIKLQHMDPQNMDFQCPHCNVGQYDTRDLKLHMLNVHDVVMGGLNACDLCGESYSTAAEYYKHMHDKHDTISKTCNECDKYFDSRKAFDKHILTHYM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01301078;
90% Identity: iTF_01301078;
80% Identity: -