Basic Information

Insect: Rhingia rostrata
Gene Symbol: -
Assembly: GCA_949824845.1
Location: OX463756.1:129330518-129336218[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.14 18 6.8 3.9 1 20 45 64 45 67 0.93

2 26 2e-06 0.00025 22.0 1.7 1 23 74 96 74 96 0.98

3 26 5.2 6.5e+02 1.8 0.1 11 23 139 151 128 151 0.70

4 26 0.00081 0.1 13.8 1.3 1 23 221 244 221 244 0.95

5 26 0.0026 0.33 12.2 2.2 1 23 251 273 251 273 0.98

6 26 0.69 87 4.6 5.0 1 20 281 300 281 302 0.94

7 26 7.9e-05 0.01 17.0 4.3 1 23 327 349 327 349 0.97

8 26 0.083 10 7.5 0.3 2 23 363 384 362 384 0.95

9 26 0.0061 0.77 11.1 0.8 1 23 457 480 457 480 0.96

10 26 0.0043 0.54 11.5 2.8 2 23 550 571 549 571 0.98

11 26 4e-07 5e-05 24.2 1.2 1 23 578 600 578 600 0.99

12 26 0.00061 0.077 14.2 3.2 1 23 737 760 737 760 0.96

13 26 0.00041 0.052 14.7 1.4 1 23 797 820 797 820 0.98

14 26 0.029 3.7 8.9 1.4 1 23 831 853 831 853 0.97

15 26 4.4e-07 5.6e-05 24.1 0.8 1 23 860 882 860 882 0.98

16 26 0.00031 0.039 15.1 0.5 3 23 907 928 906 928 0.97

17 26 0.0014 0.18 13.0 1.4 1 23 968 991 968 991 0.95

18 26 1.2 1.6e+02 3.8 3.2 1 22 998 1019 998 1019 0.95

19 26 0.067 8.5 7.8 0.5 1 23 1028 1051 1028 1051 0.91

20 26 0.0046 0.58 11.4 1.2 1 19 1057 1075 1057 1076 0.95

21 26 8.9e-05 0.011 16.8 3.0 1 23 1087 1109 1087 1110 0.96

22 26 1.3e-05 0.0017 19.4 0.3 2 23 1131 1152 1130 1152 0.95

23 26 0.00043 0.055 14.7 4.3 1 23 1158 1180 1158 1180 0.99

24 26 5.9e-07 7.4e-05 23.7 3.4 1 23 1186 1208 1186 1208 0.98

25 26 1.5e-07 1.8e-05 25.6 2.4 1 23 1214 1236 1214 1236 0.99

26 26 0.00041 0.052 14.7 0.2 1 23 1242 1266 1242 1266 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.14	18	6.8	3.9	1	20	45	64	45	67	0.93
2	26	2e-06	0.00025	22.0	1.7	1	23	74	96	74	96	0.98
3	26	5.2	6.5e+02	1.8	0.1	11	23	139	151	128	151	0.70
4	26	0.00081	0.1	13.8	1.3	1	23	221	244	221	244	0.95
5	26	0.0026	0.33	12.2	2.2	1	23	251	273	251	273	0.98
6	26	0.69	87	4.6	5.0	1	20	281	300	281	302	0.94
7	26	7.9e-05	0.01	17.0	4.3	1	23	327	349	327	349	0.97
8	26	0.083	10	7.5	0.3	2	23	363	384	362	384	0.95
9	26	0.0061	0.77	11.1	0.8	1	23	457	480	457	480	0.96
10	26	0.0043	0.54	11.5	2.8	2	23	550	571	549	571	0.98
11	26	4e-07	5e-05	24.2	1.2	1	23	578	600	578	600	0.99
12	26	0.00061	0.077	14.2	3.2	1	23	737	760	737	760	0.96
13	26	0.00041	0.052	14.7	1.4	1	23	797	820	797	820	0.98
14	26	0.029	3.7	8.9	1.4	1	23	831	853	831	853	0.97
15	26	4.4e-07	5.6e-05	24.1	0.8	1	23	860	882	860	882	0.98
16	26	0.00031	0.039	15.1	0.5	3	23	907	928	906	928	0.97
17	26	0.0014	0.18	13.0	1.4	1	23	968	991	968	991	0.95
18	26	1.2	1.6e+02	3.8	3.2	1	22	998	1019	998	1019	0.95
19	26	0.067	8.5	7.8	0.5	1	23	1028	1051	1028	1051	0.91
20	26	0.0046	0.58	11.4	1.2	1	19	1057	1075	1057	1076	0.95
21	26	8.9e-05	0.011	16.8	3.0	1	23	1087	1109	1087	1110	0.96
22	26	1.3e-05	0.0017	19.4	0.3	2	23	1131	1152	1130	1152	0.95
23	26	0.00043	0.055	14.7	4.3	1	23	1158	1180	1158	1180	0.99
24	26	5.9e-07	7.4e-05	23.7	3.4	1	23	1186	1208	1186	1208	0.98
25	26	1.5e-07	1.8e-05	25.6	2.4	1	23	1214	1236	1214	1236	0.99
26	26	0.00041	0.052	14.7	0.2	1	23	1242	1266	1242	1266	0.92

Sequence Information

Coding Sequence: ATGTTCGAAGATTCAGAATTATCATTCCCCGATTCCCGTATTCGAAAtaaaaaatccaaaactaaaCTGAAAACCCGCGGTCAACGATCCCTTCGAAGTCAAACtaagaaaatgaaaatcacTGCCGGCCGATTTGAGTGCGATTCTTGCAACAAAACGTTCGCTTGGAAAAAGGACCTATTCCGGCATGAAAAATGCCACGAGCCAAATACAAAGAAATACTCCTGTCCGCACTGCGATCGTCGATTTATTCGAAAAGATAAGCTCTCATCACATATACTCGTACATTTGGCTGATAAGACCAGTGCTACCACCAAGCGGTCTATTAAAAGCTTGCAATATTATTCTCATCTTTTATATTCCGAAAACCGATTCAAAGAAATCAAATGTATGCTCTGCAACTATGAGAGTCCGTCAAATGTATCCGAGCTTCGTCGCCACATTATCGCGCATGATAACGTAGGACTGATAGAAGATTTGGAGAAAAGTGAAGTAGTGAAGAGATTTTATCCAGGCAGGGATATGCAGGAAGTCATTGCATTGCTTGGTAGTCAAATCGCAAATGGACAGTTGGACAAATTGTACTCAATTGTAAATGAGAACACTTTTGAGATGGGTATAAGCGATTCGGATGATAGTGATCCGCAGGTGAATAATTACTACACCTGTGAAGTGTGCAACGAGGCTTTCAATCGAAAGCACAAAGTTATGTCTCATCAGGCATACGAGCACAATTTTGAAGAATGTCCCTACAAGTGTGAGATGTGTATGCTGAAATTCACCAGCAAACGTTTACTGGAGTCACATTTGAAGTACCACTGCGGGAACCCTGCAAGAGAGTTCCATTGCAAGAAGTGTCCGGCTCGATTCACGTGGCACAAGAACCTTCAAAATCACAGATGTGCCACTATAATATTAACAACGTCGGATAAGGATCTTTCTATTAAGAAGAAAACGGACATACCGGATGGAAGGGCACATAGTTGCACGGTGTGCGGTGAGAAATTCCTTAGGCCTCATAATCTGCGTAGACATTTGAAGACACATGATCAGAGGGGAATTATCCCACTGCGTGCGAAAAGAATCGTGTGCTTGCTATGCAATGTTGAGTTTTCGGGGATGCGTCAATTGAAATCCCACCTATTTTCTCATTCCGATGGCCAGACAGGCGTGAACTTTGCGAACTGTGAATTTGCAACGAACTTTCATCCAAATGAGGAACAATCTGCCATATCCGAGCACATTAGGAATTGTTTTAAGGAGGAAAGACTTTGGCAACTCTACATGGCAGTGAATAAGTTCAATCAAGAGATGATCTTGAGCGACTCGGACAGTGAAGATGAAGCAAAGTCGTTGGACACACCTTCATATACCTGCGAACTATGCAATGTAAAATTTACACGTCTACAAGACACCTTTCAGCATCAACTCATCGATCATGCTTTCGACAAAACGTTGCCTCAAAAGTGTACTAAGTGTGAAGATCAATTTGTTTGTACTGCTCTTTTAGCTCGCCACACAAAGTATGAATGCTCAACGGTGGATAGGATCCATACATGCAAAGCATGCGGGGTTGCTTTCATTtgggaacaacattttgcgGCTCATAGCTGTCCGCTGGCTGAAAAGCCCACCGAAGACAATAAGCAATGCGATGTATGCGGTAAAAAGTTCATTTGGATGAAAGACCTCCACCGACACAGGCGTTCCCACATATCAGATGAAAAGAAATTCCAATGTCTAATATGCGACCGTAAATTCAACCGAAAAGATAACATGACGGCTCACATGAAAGTCCACTCCGTGGACCACCAGGAGCAGAAGGCAAGAGCGGTGGTAAAATGGGAACAACAGGACGAGAATCTGTGTAGGCCGCATGGTGTCAAAAATATCCAGTGCAAGATCTGCTTGTCCAAGCACAACTCAATTCGCGACTTGGCAACACACTTGATGACGCACAAAGATCAGGAGTCGCTAAAGTCTAGAGAAGTCGAAATTGATGAAATTTCCATGCTGCTGTACAATAGGCAAATGGACATCCAAGAACTTACTAATGAAATACGTAACGACCTTGCGAATGGGACGAACATGCGTTTCTATTCGATCACAAACGAAGTGGGCTACGAGTTAAATTTGATTGATTCTGAAACGAGTTCCGATTTAGATGCAGAGGATTTTGACGATGACGAGAATTGTAAGCCAAAAGGATATATTTGTGAGCTATGCAGCAAATCGTTCAATAGAAAGTTTAAGTTCTTTGAACACCAGAAAAACGAGCACTCTTGGAAACAGCTGCCATTTGAGTGTACAACCTGTAGTGCAAAGTTTGCCTGCCAAAACCTTTTTAATTGTCATCTGCAATCGGAGTGTGAGAGCAGCGGCAAGCAGTATAAGTGCAAGCAATGTCCGGTGCGATTTACATGGAAAGAGAATTTAAAGACACACGAAAGGCGTGAACACGATAAGAACCATCCAGTGCAATCAAAGAAATATCCTTGCAGTTCGTGTGATAAGAGTTTCCTCTGGCAGAGAGACTTGATGAAGCATAAGAAGACCCACCAGACTGAGGAGGAGAAATTCGAATGTACTTGGTGCTTTAGAGTGTTTGTGCGAAAGGATAATCTAAAGGTTCACATGAAGGTTCATCAAAACACCACACATCTGCTGCTGCCCGACATCTACTATCTAGCCCGACCAAATGGTTCCAAAAAGGCCAACTGTAAGCTCTGTGATCAAAAGTTCACTCGCGTTCGGGACTTGCTGGAGCACATTCAAACCGCTCACTTATATGGCATGCTCGAGAGCATTCCAAGTCCGACAAGTTATTCCATAACAAACGCTTTGGGCTACGAaatgggaatcgaggactccgAAACCGAAACAGAGAAACAAGAGGAAAAGTACGCTTGTGAAATTTGCAATGCTCACTTCAATCGTCGCTTTAAACTACTGCAGCATCAGCAGGCGCTTCACTACTCCGACAATATACCTCACAAGTGCAATTTTTGCAACTTCAAATGTGTGTCAGAGGTTGTGCTGAGCTACCACATGCGATCCCAATGTTTGAATATTTCAAAGCAGTTTCGCTGCAGCAAGTGTACAATGCGGTTCATGTGGAAGGAGAATCTGGAAAACCACGAGATTCTAATTCACGACAATCCTCGAACTCATACTTGTGAGATCTGCAAAAGAGATTTTGCaacccagcacgatttgaagGGACACAGTGACTGCAAGCCACCGGCCGATGTTAAACTCTTCGAATGCGAAATGTGTGATCGCAAATATAACCGAAAAGATCGTCTGATGAAGCATGTTAAGGTTCACCACTCCGATTCAGCGCCGAAGGAGCCACGTGCCAAAAGCACACAATCTACGGATAAAAAGTTTCTGTGCGCATTCTGCGGTAAGGAAGTGTCGAGTTCTTCAAATCTTGTGATACATATGCGCCGGCATACGGGTGAGAAACCATTCAAATGTGAATTTTGTAATAAAGGTTTTCCACGCTCGTCGGATTTGAGTTGTCACCGACGGACGCACACTGGGGAGCGGCCACACAAGTGTACGGTGTGTGAAAAGGCGTTTTCACGATCGTACAAACTTCAAACACACATGCGCATACATTCGGGCGAAAGGCCTTACAAATGCACGTACTGTGACAAGAGCTTTACCCAATCGAACGATTTGACGCTACATGTGCGAAGGCACACGGGCGAAAGGCCTTATATTTGTGAGACTTGTGGTGAGCGGTTTATTCAGGGAACAGCACTACGAAATCACCGAAGAATGAGAGGGCACTACGAGATGTAA
Protein Sequence: MFEDSELSFPDSRIRNKKSKTKLKTRGQRSLRSQTKKMKITAGRFECDSCNKTFAWKKDLFRHEKCHEPNTKKYSCPHCDRRFIRKDKLSSHILVHLADKTSATTKRSIKSLQYYSHLLYSENRFKEIKCMLCNYESPSNVSELRRHIIAHDNVGLIEDLEKSEVVKRFYPGRDMQEVIALLGSQIANGQLDKLYSIVNENTFEMGISDSDDSDPQVNNYYTCEVCNEAFNRKHKVMSHQAYEHNFEECPYKCEMCMLKFTSKRLLESHLKYHCGNPAREFHCKKCPARFTWHKNLQNHRCATIILTTSDKDLSIKKKTDIPDGRAHSCTVCGEKFLRPHNLRRHLKTHDQRGIIPLRAKRIVCLLCNVEFSGMRQLKSHLFSHSDGQTGVNFANCEFATNFHPNEEQSAISEHIRNCFKEERLWQLYMAVNKFNQEMILSDSDSEDEAKSLDTPSYTCELCNVKFTRLQDTFQHQLIDHAFDKTLPQKCTKCEDQFVCTALLARHTKYECSTVDRIHTCKACGVAFIWEQHFAAHSCPLAEKPTEDNKQCDVCGKKFIWMKDLHRHRRSHISDEKKFQCLICDRKFNRKDNMTAHMKVHSVDHQEQKARAVVKWEQQDENLCRPHGVKNIQCKICLSKHNSIRDLATHLMTHKDQESLKSREVEIDEISMLLYNRQMDIQELTNEIRNDLANGTNMRFYSITNEVGYELNLIDSETSSDLDAEDFDDDENCKPKGYICELCSKSFNRKFKFFEHQKNEHSWKQLPFECTTCSAKFACQNLFNCHLQSECESSGKQYKCKQCPVRFTWKENLKTHERREHDKNHPVQSKKYPCSSCDKSFLWQRDLMKHKKTHQTEEEKFECTWCFRVFVRKDNLKVHMKVHQNTTHLLLPDIYYLARPNGSKKANCKLCDQKFTRVRDLLEHIQTAHLYGMLESIPSPTSYSITNALGYEMGIEDSETETEKQEEKYACEICNAHFNRRFKLLQHQQALHYSDNIPHKCNFCNFKCVSEVVLSYHMRSQCLNISKQFRCSKCTMRFMWKENLENHEILIHDNPRTHTCEICKRDFATQHDLKGHSDCKPPADVKLFECEMCDRKYNRKDRLMKHVKVHHSDSAPKEPRAKSTQSTDKKFLCAFCGKEVSSSSNLVIHMRRHTGEKPFKCEFCNKGFPRSSDLSCHRRTHTGERPHKCTVCEKAFSRSYKLQTHMRIHSGERPYKCTYCDKSFTQSNDLTLHVRRHTGERPYICETCGERFIQGTALRNHRRMRGHYEM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01300231;
90% Identity: iTF_01300231;
80% Identity: -