Rros019642.1
Basic Information
- Insect
- Rhingia rostrata
- Gene Symbol
- Zfa_1
- Assembly
- GCA_949824845.1
- Location
- OX463758.1:15935724-15938664[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0013 0.16 13.2 0.3 2 23 100 122 99 122 0.96 2 20 0.0029 0.37 12.1 0.2 1 23 128 150 128 150 0.96 3 20 0.00047 0.06 14.5 1.2 2 23 159 180 159 180 0.97 4 20 7.9e-05 0.01 17.0 1.2 1 23 186 209 186 209 0.97 5 20 8e-05 0.01 17.0 0.8 1 19 241 259 241 261 0.97 6 20 1.2e-06 0.00015 22.7 1.2 1 23 269 291 269 291 0.98 7 20 8.9e-07 0.00011 23.1 2.1 1 23 297 320 297 320 0.98 8 20 0.002 0.25 12.6 1.6 1 23 330 353 330 353 0.94 9 20 1.5e-06 0.00018 22.4 2.4 3 23 446 466 444 466 0.97 10 20 1.5e-06 0.00019 22.4 1.2 1 23 472 494 472 494 0.98 11 20 0.00022 0.028 15.6 0.8 1 23 505 529 505 529 0.98 12 20 0.00044 0.056 14.6 0.5 1 20 535 554 535 556 0.93 13 20 0.19 23 6.4 5.7 1 23 594 616 594 616 0.97 14 20 0.00013 0.016 16.3 1.3 1 23 622 644 622 644 0.98 15 20 3.5e-05 0.0044 18.1 2.5 1 23 650 672 650 672 0.97 16 20 0.00042 0.053 14.7 3.2 1 23 678 700 678 700 0.97 17 20 6.6e-08 8.3e-06 26.7 0.3 2 23 793 814 792 814 0.97 18 20 0.0022 0.28 12.4 1.9 1 23 820 842 820 842 0.99 19 20 0.00025 0.032 15.4 0.2 1 23 849 871 849 871 0.97 20 20 0.00047 0.06 14.5 5.2 1 23 877 899 877 900 0.96
Sequence Information
- Coding Sequence
- ATGCAGAACAACACAGATCTATTTACCCCACTACCAGTGGATATATCCACTCCTAATGCCTTGCTATACCAACTTAATGATTCCGACGAGAAGTTTCTCAAGTCAAgtgatttttatgttttcgaaaTGGACAGTTTCACCGTTCCCGAGATCGATACAATAACAGGCCTAAGTCCTATTCCGGAGGAAATGAACTGCTCGTTAAAAGCTCCCCAAATGGAACTACTATTCCATCCAGTCGAGACGAAGCCATCGCCACAGAAATGCATAGTGAATAGTCACATAGTGAAACAGCTCTCATGTGATTTGTGCTCGGAGACATTCTCCTCAGCGCAAGTATTACGCTTACACAGACGTGTCCAACATATTTCAACTAAAGAATTTCGCTGTCGTAAGTGTCCAGCGTCGTATAACTTCGAATCGAATTTGCTGCTCCATCTTGCGGCGCATGTCCCCAGTTGTAGTACAAAGAGAGAGTGTCCCGAAtgtaaaattttcttcaatCGGACTTCGAGCTTCAAGGGCCATTTAAAGTCACATCAGACAAATGATCTTTTCAAATGTAATCGTTGCGACAAGGAGTTCGAATTCAAAGGCTATTACGAGAAGCATTTGGCCACGGCACATAAACCAGGCGCAGATGGAACAGTTGAGGAAATTCTCGCGAAAGTTGCCAGCAACGCTAGAAGTCGAGTGAAAAGCAAAAATAAACAGGGGAAATATTCCTGTGAAACGTGTGGCAAGAACTTCCCCAGGCCATGTCTGCTGAAGCGACATGAAGTCTGTCACACCGGTGCAAAGCCATTTAAATGCACCGAGTGCAATCAGGGATTTACACAGAAAACATCGCTGGCAAGGCATATGCTGTTACATGAGGGCGTTAAAGATTTCAAATGTCCCAAATGTGACTTGTGCTTTGCCCAAAAAAATAACCTGATAGTACACATCAAACGAACGCACCCGATACATGAAAACACGGAGTACATGTTCTCTTGTGAGTACTGTGCCTGTGTGTTTACTAAGCTAAACAGTCTCAATCGCCATAAGGCGGTAATACACCCAAAAAGTGAACATGATGGTGACCACGATGGGCtcaatgatgacgatgacgataatGTCAATGTTGCTAAAGTTATGGAGCAGCTAAAGAGCTTTCAAGAGTCTATGCGAATAATTGACATGCAACCGCCAGCCTTGGAGATGTCTCTAATGAAGCCCCCATCGCCAGGACCAAGAATACGTACTCTTACCTTGGTTGACACGTTAAGTCCGAGAAAGGAAAAGACCTTCAAGACAGTCAAAGAGATCGTTTACAAGGGACAGCGAACGTTGGCATGTATGCACTGTGATAAAGCGTTTAAGAGACAGTTTGACCTGTTGAGACACCTTCGCACACACACAAAGGAAAAGCTATTTCAATGTGAAATCTGTCAAAAACACTTCCCAACCAGTGCAGCCCTTAAAACTCATCAAAACATACACGTGACTTCTCAAGAGAAACTAGCAAAAGTGTACGAATGCACTGCGTATGAGTGTGGTAAACGATTCTCTTCCATGCGTAGACTGGACATTCACACAAGAACTCACACCACTTCCATTTCCTACATTTGTCCACTGTGCTCGAAAACGTTTACATCCAAAGCTGGCTTTTCTGCGCACAAACACATTCCCGAGGATAAAGAGTTTGACTTGGTCCGCCCTCTCCTCTTGGCTCCggttaaaatcgaatcaaatgtCGAAAAGGAAGCAGTCAAGGTCGATGAGTACTCCAATAGAATCCATCAATGCTGCGTTTGTGGACTGAAAATGAAGAAACTATCACACTTGCAGCAGCACGAAGCAACTCACAAAGGAGAAAAGCCTTTCAAGTGTCTTATCTGCCTTAGATCATACACCACTCAAAGCTCCCTCAATCTACATTCTAAAATCCACACCGCTGATAAACCCCATAAATGCGAAATCTGCAATGCAAAATTCATAACACGATCTCTACTTAAACGCCACAAAATTTCGCACAGCACAGATCGACGTTTCAACTGTCCATATTGCAGCGAGCGTTTCAAAACTCGAGACAACTGCAAGAATCACATTCTAATTCACGCCCGCAACCTCTTAGCGACTACTGAAGAAAAACCCACTCAGCTGTCACTTCCAATTGAGACTTCTTTACCAGAAACGGTCGCTCAACCATTAATAGCGGTTGTCCAGAGCCCTCAGAAGAACCTTTCACCAAAGTTCATCCAGCTTGAGATGATCAAAAACTGCAAGAAGCACACTCATAAAAACCTTACCATAGAGACAGTGTCCTCCAGTCCGCCAAAGAAATCAAAGTTATCACTTGCAAGATCATTGAAACAAATTGGCCAAACTGCCCTCCAATGTGATGAGTGTGGAAAGACTTTTTACAAACCAAGTGATTTGGAGCGCCATGCCCGCACACACACAAAAGAAAAGCCATACAAATGCAGCTTGTGCACAAAGACATTCGCCTTGATGTCAACCATGCTGGAACACAAGAAAACTCATGATAAACTAAGAGAGACATTCGCCTGTCAAGTGTGTGGCAAGTTGTATACATCGAAGAAGGTACTAGTTGTGCATTTGAGAATTCACACAGGCGAGCGACCATTTCAGTGCGCTAATTGCAAGCAAACATTTCGCACATCGGGACACAGGATATCGCATATGAAAGTGCATCATAAGAAACGGAAGTGA
- Protein Sequence
- MQNNTDLFTPLPVDISTPNALLYQLNDSDEKFLKSSDFYVFEMDSFTVPEIDTITGLSPIPEEMNCSLKAPQMELLFHPVETKPSPQKCIVNSHIVKQLSCDLCSETFSSAQVLRLHRRVQHISTKEFRCRKCPASYNFESNLLLHLAAHVPSCSTKRECPECKIFFNRTSSFKGHLKSHQTNDLFKCNRCDKEFEFKGYYEKHLATAHKPGADGTVEEILAKVASNARSRVKSKNKQGKYSCETCGKNFPRPCLLKRHEVCHTGAKPFKCTECNQGFTQKTSLARHMLLHEGVKDFKCPKCDLCFAQKNNLIVHIKRTHPIHENTEYMFSCEYCACVFTKLNSLNRHKAVIHPKSEHDGDHDGLNDDDDDNVNVAKVMEQLKSFQESMRIIDMQPPALEMSLMKPPSPGPRIRTLTLVDTLSPRKEKTFKTVKEIVYKGQRTLACMHCDKAFKRQFDLLRHLRTHTKEKLFQCEICQKHFPTSAALKTHQNIHVTSQEKLAKVYECTAYECGKRFSSMRRLDIHTRTHTTSISYICPLCSKTFTSKAGFSAHKHIPEDKEFDLVRPLLLAPVKIESNVEKEAVKVDEYSNRIHQCCVCGLKMKKLSHLQQHEATHKGEKPFKCLICLRSYTTQSSLNLHSKIHTADKPHKCEICNAKFITRSLLKRHKISHSTDRRFNCPYCSERFKTRDNCKNHILIHARNLLATTEEKPTQLSLPIETSLPETVAQPLIAVVQSPQKNLSPKFIQLEMIKNCKKHTHKNLTIETVSSSPPKKSKLSLARSLKQIGQTALQCDECGKTFYKPSDLERHARTHTKEKPYKCSLCTKTFALMSTMLEHKKTHDKLRETFACQVCGKLYTSKKVLVVHLRIHTGERPFQCANCKQTFRTSGHRISHMKVHHKKRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01300229;
- 90% Identity
- iTF_01300229;
- 80% Identity
- -