Basic Information

Insect: Rhingia campestris
Gene Symbol: Zfa_1
Assembly: GCA_932526435.1
Location: CAKOBE010000110.1:1819152-1822106[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0013 0.18 13.2 0.3 2 23 105 127 104 127 0.96

2 20 0.00028 0.04 15.2 0.5 1 23 133 155 133 155 0.98

3 20 0.00067 0.094 14.1 0.5 2 23 164 185 163 185 0.97

4 20 7.9e-05 0.011 17.0 1.2 1 23 191 214 191 214 0.97

5 20 0.00047 0.067 14.5 2.6 1 19 246 264 246 266 0.96

6 20 2.2e-06 0.00031 21.9 1.9 1 23 274 296 274 296 0.98

7 20 8.9e-07 0.00012 23.1 2.1 1 23 302 325 302 325 0.98

8 20 0.0026 0.36 12.2 2.0 1 23 335 358 335 358 0.94

9 20 1.5e-06 0.0002 22.4 2.4 3 23 451 471 449 471 0.97

10 20 4.7e-06 0.00066 20.8 0.7 1 23 477 499 477 499 0.98

11 20 0.00017 0.024 15.9 0.5 1 23 510 534 510 534 0.98

12 20 0.0006 0.084 14.2 0.8 1 20 540 559 540 561 0.94

13 20 0.13 18 6.9 6.4 1 23 599 621 599 621 0.97

14 20 0.00013 0.018 16.3 1.3 1 23 627 649 627 649 0.98

15 20 3.5e-05 0.0049 18.1 2.5 1 23 655 677 655 677 0.97

16 20 0.00042 0.059 14.7 3.2 1 23 683 705 683 705 0.97

17 20 3e-07 4.2e-05 24.6 1.2 2 23 797 818 796 818 0.96

18 20 0.0022 0.31 12.4 1.9 1 23 824 846 824 846 0.99

19 20 1.6e-05 0.0022 19.2 0.1 1 23 853 875 853 875 0.97

20 20 0.00072 0.1 14.0 7.4 1 23 881 903 881 904 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0013	0.18	13.2	0.3	2	23	105	127	104	127	0.96
2	20	0.00028	0.04	15.2	0.5	1	23	133	155	133	155	0.98
3	20	0.00067	0.094	14.1	0.5	2	23	164	185	163	185	0.97
4	20	7.9e-05	0.011	17.0	1.2	1	23	191	214	191	214	0.97
5	20	0.00047	0.067	14.5	2.6	1	19	246	264	246	266	0.96
6	20	2.2e-06	0.00031	21.9	1.9	1	23	274	296	274	296	0.98
7	20	8.9e-07	0.00012	23.1	2.1	1	23	302	325	302	325	0.98
8	20	0.0026	0.36	12.2	2.0	1	23	335	358	335	358	0.94
9	20	1.5e-06	0.0002	22.4	2.4	3	23	451	471	449	471	0.97
10	20	4.7e-06	0.00066	20.8	0.7	1	23	477	499	477	499	0.98
11	20	0.00017	0.024	15.9	0.5	1	23	510	534	510	534	0.98
12	20	0.0006	0.084	14.2	0.8	1	20	540	559	540	561	0.94
13	20	0.13	18	6.9	6.4	1	23	599	621	599	621	0.97
14	20	0.00013	0.018	16.3	1.3	1	23	627	649	627	649	0.98
15	20	3.5e-05	0.0049	18.1	2.5	1	23	655	677	655	677	0.97
16	20	0.00042	0.059	14.7	3.2	1	23	683	705	683	705	0.97
17	20	3e-07	4.2e-05	24.6	1.2	2	23	797	818	796	818	0.96
18	20	0.0022	0.31	12.4	1.9	1	23	824	846	824	846	0.99
19	20	1.6e-05	0.0022	19.2	0.1	1	23	853	875	853	875	0.97
20	20	0.00072	0.1	14.0	7.4	1	23	881	903	881	904	0.96

Sequence Information

Coding Sequence: ATGCAGAACAACACAGATCTATTTACGCCACTACCAGTGGATATATCTACTCCAAATGCCTTGCTATACCAACTTAATGATTCCGACGAGAAGTTTCTCAAGTCAAGTGAGTTTTATGTTTTCGAAATGGACAGTTTCACCGTTCCCGAGATCGATACAATAACCGGCTTGAGTCCTATTCCGGAGGAGATAAATTGCTCGTTCAATGCTCCCCAAATGGAACTACTATTCCATCCAGTTGAAACGAAACCATCGGTACAGAAATACACCATCCCAGAACCAGATGAAAGGCCGCACTTAGTAAAACAACTCTCATGTGATTTGTGTTCGGAGACATTCTCCTCCGCGCAGGTATTACGCTTACACAGACGTGTCCAACATATATCGACTAAAGAATTCCGCTGTCGTAAGTGTCCAGCGTCGTTTAACTTCGAATCGAATTTGCTGCTCCATCTTGCGTCGCATGTCCCCAGTTGTAGTACAAAGAAAGAATGCCCCGAGTGTAAAATTATCTTCAATCGGATTTCGAGCTTCAAGGGTCACTTAAAGTCACATCAGACAAGTGATCTTTTCAAATGTAATCGTTGTGACAAAGAGTTCGAATTCAAGGGCTATTACGAGAAGCATTTGGCCACGGCACATAAACCAGGCGCAGATGGAACAGTTGAGGAAATTCTCGCGAAAGTTGCCAGTAACGCTAGAAATCGAGTGAAAAGCAGAAATAAACAGGGGAAATATTGCTGCGAAACGTGTGGTAAGAACTTTCCCAGGCCATGTCTGCTAAAGCGACATGAAGTCTGTCACACCGGTGCGAAGCCATTTAAATGCACCAAGTGCAATCAGGGATTTACACAGAAAACATCGCTGGCCAGGCACATGCTGCTGCATGAAGGCGTAAAGGATTTCAAATGTCCCAAATGTGACTTATGCTTTGCACAGAAAAACAACCTCATAGTGCACATCAAACGAACCCATCCGATACATCCAAACACCGACTACATGTTCTCTTGTGAGTACTGTGCCTGTGTGTTCACCAAGCTAAACAGTCTCAATCGCCACAAGGCGGTAATGCACCCAAAAAGTGAACATGATGGCGACCACGATAGGCTCAATGATGACGATGACGATAATGTCAATGTTGCTAAAGTTATGGAGCAGCTAAAGAGCTTTCAAGAGTCTATGCGAATAATTGACATGCAACCGCCAGCCTTGGAGATGTCTCTAATGAAGCCCCCATCCCCAGGGCCAAGGATACGGACTTTGACCTTGGTTGACACATTAAGTCCGAGAAAGGAAAAGACTTTGAAGACAGTCAAAGAGATCGTTTACAAGGGACAGCGAACGTTGGCATGTATGCACTGTGATAAGGCGTTTAAGAGGCAGTTTGACCTGTTGAGACATCTTCGCACACACACAAAGGAAAGGCTATTTCAATGTGAAATCTGTCAAAAACACTACCCAACAAGTGCAGCCCTCAAAACCCACATAAACATTCACGTCTCCTCTCAAGAGAAGCCAGCAAAAGTGTACGAATGCACTGCGGATGAGTGTGGTAAACGATTCTCTTCCATGCGCAGACTGGACATTCACACAAGAACTCACACCACTTCCATTTCGTACATTTGTCCACTGTGCTCGAAAACGTTTACATCCAAAGCTGGCTTTTCAGCGCACAAACACAATCCCGAGGATAAAGAGTTCGACTTGGTCCGGCCTCTCCTTATGGCTCCGGTTAAAATCGAATCAAAAGTCGAAAAGGAAGCAGTCAAGGTCGATGAGTACTCCAATAGAATCCATCAGTGCTGCGTTTGTGGACTCAAAATGAAGAAACGATCGCACCTCCAGCAGCACGAAGCAACGCACAAGGGAGAAAAGCCTTTCAAGTGTCTTATCTGCCTTAGATCCTACACCACTCAAAGCTCCCTCAATCTACATTCTAAAATCCATACCGCTGATAAACCCCATAAGTGCGAAATCTGCAATGCAAAGTTCATAACACGATCTCTACTTAAACGCCACAAAATTTCGCACAGCACCGATCGACGTTTCAACTGTCCATATTGCAGCGAGCGTTTCAAAACTCGAGACAACTGCAAGAATCACATTCTAATTCATGCCCGCAACCTCTTAGCGACGACGGAAGAAAAACCCACTCAGTTACCACTTCCCATAGAGAATTCTCTGCCAGAAACGGTCTCTCAGCCATGCATAGCGGTTGTTCAGAGCCCTCAGAAGAACCTTTCACCCAAATTCATCCAGCTTGAGATGATCAAAAACTGCAAGAAGCACACTCACAAAAACCTTACCATCGAGACAGTGTCCAGTCCGCCAAAGAAATCAAAGCTATCGCTAGCACGATCGTTAAAACAAATTGGCCAAACAGCCCTCCATTGCGATGAGTGTGGAAAGACTTTCTACAAACCAAGTGATTTGGAGCGCCATGCCCGCACACACACAAAAGAAAAGCCATATAAATGCAGCTTGTGTACGAAGACATTCGCCCTGATGTCCACCATGCTGGAACACAAGAAAACCCATGATAAGCTGAGAGAGACATTCGCCTGTCAAGTGTGCGGCAAGGTGTACACGTCGAAGAAGGTACTGGTTGTGCATTTGAGAATTCATACAGGTGAGCGACCATTTCAGTGCGCTCATTGCAAGCAAACATTTCGCACATCTGGACACAGAATATCGCATATGAAGGTGCATCATAAGAAACGGAAGTGA
Protein Sequence: MQNNTDLFTPLPVDISTPNALLYQLNDSDEKFLKSSEFYVFEMDSFTVPEIDTITGLSPIPEEINCSFNAPQMELLFHPVETKPSVQKYTIPEPDERPHLVKQLSCDLCSETFSSAQVLRLHRRVQHISTKEFRCRKCPASFNFESNLLLHLASHVPSCSTKKECPECKIIFNRISSFKGHLKSHQTSDLFKCNRCDKEFEFKGYYEKHLATAHKPGADGTVEEILAKVASNARNRVKSRNKQGKYCCETCGKNFPRPCLLKRHEVCHTGAKPFKCTKCNQGFTQKTSLARHMLLHEGVKDFKCPKCDLCFAQKNNLIVHIKRTHPIHPNTDYMFSCEYCACVFTKLNSLNRHKAVMHPKSEHDGDHDRLNDDDDDNVNVAKVMEQLKSFQESMRIIDMQPPALEMSLMKPPSPGPRIRTLTLVDTLSPRKEKTLKTVKEIVYKGQRTLACMHCDKAFKRQFDLLRHLRTHTKERLFQCEICQKHYPTSAALKTHINIHVSSQEKPAKVYECTADECGKRFSSMRRLDIHTRTHTTSISYICPLCSKTFTSKAGFSAHKHNPEDKEFDLVRPLLMAPVKIESKVEKEAVKVDEYSNRIHQCCVCGLKMKKRSHLQQHEATHKGEKPFKCLICLRSYTTQSSLNLHSKIHTADKPHKCEICNAKFITRSLLKRHKISHSTDRRFNCPYCSERFKTRDNCKNHILIHARNLLATTEEKPTQLPLPIENSLPETVSQPCIAVVQSPQKNLSPKFIQLEMIKNCKKHTHKNLTIETVSSPPKKSKLSLARSLKQIGQTALHCDECGKTFYKPSDLERHARTHTKEKPYKCSLCTKTFALMSTMLEHKKTHDKLRETFACQVCGKVYTSKKVLVVHLRIHTGERPFQCAHCKQTFRTSGHRISHMKVHHKKRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01301073;
90% Identity: iTF_01301073;
80% Identity: -