Rros005268.1
Basic Information
- Insect
- Rhingia rostrata
- Gene Symbol
- -
- Assembly
- GCA_949824845.1
- Location
- OX463755.1:119318278-119320062[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-12 9.7e-10 38.7 0.0 3 38 13 48 11 51 0.91
Sequence Information
- Coding Sequence
- ATGCCTAAGACAGGTGAAATAAGGCGATGGGATGCAGATATGATGCGGAAAGCTGTGCAAGCTGTAAGGAATGGCGAAATGGGCATTCAAATGGCATCAAAAACATACAGCGTCCCACATACAACCCTTTACAGGATGGCTCGAAGTAAGGATGATATTGATACATTAATTGCTACGCCCCTAGGCCGTAAGCCTGTCCTCAGTGACGTTATGGAACTTGAGTTAGTTCATTATGCTCTTGAGATGGAGTCTAGGTTTTGGGGCCTGACCAGGAGTGACATTCGATCTCTTGCATTtcaagttgcaaaaaaaaattgtattccgAATCGCTTTTCCATTTTAAAAGAATGTGCTGGGAAAGATTGGCTATACGCGTTTCTTAAGCGCCACAAGAACAAACTAAGAATTCCTGGAACGTCATTCGATAGAGCCAGAggatttacaaaagaaaatgtAGAATCCTTTTTCAGCCTCCTGGATGGAGAATATGAAAAGCATAACTTTTCCGCAACAGAGATTTGGAATGTGGATGAAACGGGGCTTTCGATCGTTCAAAGCAAGCATCCAAAGATCTTAGGAAAAAAGGGTAAAAGGCAAATAGGAGCAATGACTTCTGCCGAACGGGGCTCACTTATTACCGTCATCACTTGCATGAGCGCAGGCGGATCTTTTGCTCCACCTTTTTTCATTTTCcctcgaaaaaataaaaatccacaactgatgaaaCACGCCCCTCCTGGATCTGATTCGGCTTGTCACATTTCTGGTTGGGTACAGGTAGATATATTCACAAACTGgttccaacattttttaaaatacacaAAGCCAACCATAGATAAGcccattttattagttttggatGGTCACTACAACCATACAAGGAACATAGAGCTGTTGGAACTAGCTCGTGCTAATGGCGTCGTAATTATTTCACTTCCACCGCACTCGACCCACAAGTTACAGCCATTAGATAGGACATTTATGGGGCCTATGAAAATATATTATAGTGAAGAAATAAGGAAATTCACACGCGAACACGGTAGGAAAGTAACCCAATTTGACGTTACTGAATTATTTGCAAGGGCCTACCTAAAAGTGCAGTCAGGCGAAATCGCTATAAATGGATTTAAATGCACTGGCATTTAtccatttaataaaaacatattcTGTGATGCTGACTTCATAGCTGGAGAAACTGACGAAAATGAAAAACCCGTTGATGGAAACATCGTCGTCAGAGAAAAAACCTGTAGCGGAATTGCGATGGAACACAACGTCATCCCCTCATCTCCAGCTTTTCCACATCAGTCCTCTCCTTCGGTTGTCCCGAGTACTAGCCAGCATTTAACACCGTGGGATATTTCACCTCCACCTAAAATTCACCGACCGACAACCAGTCGCAGAGGACGAACATCAAAGCCGACTGTACTAACAAAGTCGCCATATAAGGATGAGCTGAAGCAAAGTCTGAAAACAATTAAAGAGCGTAAAGAAAAAATTGGCAAGGGTCGTAAACGCATAGACAAAACGCATAAACGAGGTATTCCAAACTCTTCTTCTAGCGATTCCGACACCAGTCTGGTTTTCAAAGATTCTGACGACGAAGAAATATTCCCAGATGTCCCGAACAACAAAGACACAAGGTGCATGTTTTGCAATATTTCCTACGAGGACGACGTGACAGCAAAGAAATGGAGTCAGTGCTTGCAGTGCGATATGATTTGGGCGCATGACACCTGTCTTCCACGTGGTCAAGCCATTTTTATCTGCGAATCCTGCGTTTAA
- Protein Sequence
- MPKTGEIRRWDADMMRKAVQAVRNGEMGIQMASKTYSVPHTTLYRMARSKDDIDTLIATPLGRKPVLSDVMELELVHYALEMESRFWGLTRSDIRSLAFQVAKKNCIPNRFSILKECAGKDWLYAFLKRHKNKLRIPGTSFDRARGFTKENVESFFSLLDGEYEKHNFSATEIWNVDETGLSIVQSKHPKILGKKGKRQIGAMTSAERGSLITVITCMSAGGSFAPPFFIFPRKNKNPQLMKHAPPGSDSACHISGWVQVDIFTNWFQHFLKYTKPTIDKPILLVLDGHYNHTRNIELLELARANGVVIISLPPHSTHKLQPLDRTFMGPMKIYYSEEIRKFTREHGRKVTQFDVTELFARAYLKVQSGEIAINGFKCTGIYPFNKNIFCDADFIAGETDENEKPVDGNIVVREKTCSGIAMEHNVIPSSPAFPHQSSPSVVPSTSQHLTPWDISPPPKIHRPTTSRRGRTSKPTVLTKSPYKDELKQSLKTIKERKEKIGKGRKRIDKTHKRGIPNSSSSDSDTSLVFKDSDDEEIFPDVPNNKDTRCMFCNISYEDDVTAKKWSQCLQCDMIWAHDTCLPRGQAIFICESCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00991688; iTF_01253563; iTF_01299934; iTF_01300772; iTF_01299935;
- 90% Identity
- iTF_01299935;
- 80% Identity
- -