Rcam010015.1
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- -
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000068.1:3290933-3292405[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-12 8.4e-10 39.1 0.0 3 38 13 48 11 51 0.91
Sequence Information
- Coding Sequence
- ATGCCTAAGACAGGTGAAATAAGGCGATGGGATGCAGATATGATGCGGAAAGCTGTGCAAGCTGTAAGGAATGGCGAAATGGGCATTCAAATGGCATCAAAAACATACAGCGTCCCACATACAACCCTTTACAGGATGGCTCGAAGTAAGGATGATATTGATACATTAATTGCTACGCCCCTTGGCCGTAAGCCTGTCCTCAGTGACGTTATGGAACTTGAgttagttcattatgctcttgagatggagtctaggttttggggcctgaccaggagtgacattcgatctcttgcaattcaagttgcaaaaaaaatttgtattccgaatcgcttttccattttaaaagaatgtgctgggaaagattggctatacgcgtttcttaagcgccacaagaacaaactaagaattcgtgctccaactggaacgtcattcgacagagccagaggatttacaaaagaaaatgtagaatcctttttcagcctcctggatggagaatatgaaaagcataacttttccgcaacagggatttggaatgtggatgaaacgggacttccgatcgttcaaagcaagcatccaaagatcttaggaaaaaaggggaaaaggcaaataggagcaatgacttctgccgaacggggctcacttattaccgtcatcacttgcatgagcgcaggcggatcttttgctccaccttttttcattttccctcgaaaaaataaaaatccacaactgatgaaacacgcccctcctggatctgattcggcttgtcacatttctggtttggtacaggtagatatattcacaaactggttccaacattttttaaaatacacaaagccaaccatagataagcccattttattagttttggatggtcactacagccatacaaggaacatagagctgttggaactagctcgtgctaatggcgtcgtaattatttcacttccaccgcactcgacccacaagttacagccattagataggacaattatggGGCCTATGAAAATATATTATAGTGAAGAAATAAGGAAATTCACACGCGAACACGGTAGGAAAGTAACCCAATTGCACGTTACTGAATTATTTGCAAGGGCCTACCTAAAAGTGCAGTCAGGCGAAATCGCTATAAATGGATTCAAATGGACTGGCATTTATCCATTTAATAAAAACATATTCTGTGATGCTGACTTCATAGCTGGAGAAACTGACGAAAATGAAAAACCCGTTGATGGAAACATCGTCGTCAGAGAAAAAACCTGTAGCGGAATTGCAATGGAACACAACGTCATCCCCTCATCTCCAGCTTTTCCACATCAGTCCTCTCCTTCGGTTGTCCCGAGAACTAGCCAGCAATTAACACCGTGGGATATTTCACCTCCACCTAAAATTCACCGACCGACAACCAGTCGCAGAGGACGAACATCAAAGCCGACTGTACTAACAAAGTCGCCATATAAGGATGGGCTGAAGTAA
- Protein Sequence
- MPKTGEIRRWDADMMRKAVQAVRNGEMGIQMASKTYSVPHTTLYRMARSKDDIDTLIATPLGRKPVLSDVMELELVHYALEMESRFWGLTRSDIRSLAIQVAKKICIPNRFSILKECAGKDWLYAFLKRHKNKLRIRAPTGTSFDRARGFTKENVESFFSLLDGEYEKHNFSATGIWNVDETGLPIVQSKHPKILGKKGKRQIGAMTSAERGSLITVITCMSAGGSFAPPFFIFPRKNKNPQLMKHAPPGSDSACHISGLVQVDIFTNWFQHFLKYTKPTIDKPILLVLDGHYSHTRNIELLELARANGVVIISLPPHSTHKLQPLDRTIMGPMKIYYSEEIRKFTREHGRKVTQLHVTELFARAYLKVQSGEIAINGFKWTGIYPFNKNIFCDADFIAGETDENEKPVDGNIVVREKTCSGIAMEHNVIPSSPAFPHQSSPSVVPRTSQQLTPWDISPPPKIHRPTTSRRGRTSKPTVLTKSPYKDGLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01300773;
- 90% Identity
- iTF_01299935;
- 80% Identity
- -