Rcam005756.1
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- -
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000040.1:1598335-1598829[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-08 8.1e-06 26.3 0.0 4 34 12 42 9 48 0.91
Sequence Information
- Coding Sequence
- ATGCCTAAATGTACTGGTAAATATGCCGAAAAGGATCTCGAGAAAGCTCTTGAAGCTGTGAGGACACAAAAGATGTCCAAAAAAGCTGCAGCCAAACTTTTTAATATAACTCGAACTACACTCATATTTCGATTGAGTTCTAAGTTCCTTAAAGCAAGGCCAGGTCCACAAACAGTTTTTTCCGCTATAGAAGAAGGGTGTTTGGAAGAATGGATAACCACATCCAAGCGAAAAGGTTTCCCGAAGAGAAAAGAGGATGTGCTTCATGCCGTCAAGGATTTTCTTGAAAAAGACAAAAGGGAACATCCTTTTGGGCCACAAAACATTCCAGGGAATGGCTGGTTTAAGGCGTTTTTGAGTCGACACCCTTCAATAAGCCTTAGGACACCAGATCCGGTAACATCGGCCAGCGCAACAGTTGGATCATCGGACATCAAATCGTGGTTTATGTTAATAGAAAAATATCTTGCGGAGCAGAACATGTTGGCCATTTGA
- Protein Sequence
- MPKCTGKYAEKDLEKALEAVRTQKMSKKAAAKLFNITRTTLIFRLSSKFLKARPGPQTVFSAIEEGCLEEWITTSKRKGFPKRKEDVLHAVKDFLEKDKREHPFGPQNIPGNGWFKAFLSRHPSISLRTPDPVTSASATVGSSDIKSWFMLIEKYLAEQNMLAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00188027;
- 90% Identity
- iTF_01299940; iTF_01299946; iTF_01299943; iTF_01299945; iTF_01299947;
- 80% Identity
- -