Rcam007914.1
Basic Information
- Insect
- Rhingia campestris
- Gene Symbol
- -
- Assembly
- GCA_932526435.1
- Location
- CAKOBE010000051.1:1649240-1649764[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.9e-11 6.9e-08 32.9 0.0 1 34 9 42 9 53 0.91
Sequence Information
- Coding Sequence
- ATGCCTAAATGTACTGGTAAATATACCGAAAAGGATCTCGAGAAAGCTCTTGAAGCTGTGAGGACACAAAAGATGTCCAAAAAAGCTGCAGCCAAACTTTTTAATATACCTCGAACTACACTCATATTTCGATTGAGTTCTAAGTTCCTTAAAGAAAGGCCAGGTCCACAAACAGTTTTGTCCGCTATAGAAGAAGGGTGTTTGGAAGAATGGATAACCACATCCAAGCGAAAAGGTTTCCCGAAGAGAAAAGAGGATGTGCTTCATGCCGTCAAAGATTTTCTTGAAAAAGACAAAAGGGAACATCCTTTTGGGCCACAAAACATTCCAGGGAATGGCTGGTTTAAGGCGTTTTTGAGTCGACACCCTTCAAAAAGCCTTAGGACACCAGATCCGGTAACATCGGCCAGCGCAACAGTTGGATCATCGGACATCAAATCGTGGTTTATTTTAATAGAAAAACATATGAGAGGCTACAATCCGCTATGCGGATCGTTGAATACCCTATCCCATCCCATCCTTTAA
- Protein Sequence
- MPKCTGKYTEKDLEKALEAVRTQKMSKKAAAKLFNIPRTTLIFRLSSKFLKERPGPQTVLSAIEEGCLEEWITTSKRKGFPKRKEDVLHAVKDFLEKDKREHPFGPQNIPGNGWFKAFLSRHPSKSLRTPDPVTSASATVGSSDIKSWFILIEKHMRGYNPLCGSLNTLSHPIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00188027;
- 90% Identity
- iTF_01299953;
- 80% Identity
- -