Rmeg023603.1
Basic Information
- Insect
- Rhimphoctona megacephalus
- Gene Symbol
- -
- Assembly
- GCA_963989365.1
- Location
- OZ022421.1:25258998-25262984[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.008 1.1 10.6 0.8 1 23 203 226 203 226 0.97 2 13 0.011 1.6 10.1 4.6 2 23 370 392 370 392 0.91 3 13 0.0001 0.014 16.5 1.0 3 23 456 477 454 477 0.95 4 13 6.4 9.1e+02 1.5 7.6 3 23 565 586 564 586 0.95 5 13 0.042 6 8.3 0.2 1 23 639 662 639 662 0.95 6 13 0.00063 0.089 14.1 0.5 2 23 708 730 707 730 0.95 7 13 0.0026 0.37 12.1 0.1 3 23 755 776 753 776 0.93 8 13 0.15 21 6.6 4.4 2 23 846 868 845 868 0.96 9 13 0.011 1.6 10.1 2.4 2 23 882 904 881 904 0.94 10 13 0.00078 0.11 13.8 0.1 2 23 950 972 950 972 0.93 11 13 0.052 7.5 8.0 1.6 1 23 1070 1092 1070 1092 0.98 12 13 0.00071 0.1 13.9 0.4 3 23 1109 1130 1108 1130 0.98 13 13 0.061 8.7 7.8 0.4 1 23 1207 1230 1207 1230 0.97
Sequence Information
- Coding Sequence
- ATGACGTCCACAGTGGCCCGTGAGCAATTGGGGATGATGATGGATCAGCAAATAAGTGAGCTCGATAGTGAGAGTTCGAGCAGTTGCGAGGATCGAGAGGCGCGAAAACGTTTGCGCGAGGATCCGGACAACAACCTTGGTGGCAGTCCGAAAAAACGTCGGAAGCAAACGACACCAGTTAGATTTCCAACGTCGTTGATGTGCAACAACGGCGAGAGGAACGAGTCCGAGaatgaggaagaggaggaggaggaggaggaggaggaggaggagcaggaggaggaggaagtggtggaggaggaggaggagcaggaggaggaggaggaggaggatgatGAGGATGAGGATGAGGATGAGGAAGAGGAGAAGGTGGTGGAGGAAGACGAGCAACAACTGAACGAGAACCATTTCGAGGGTGAGACCAAACCGGACGAGAGAAGgaacaacgaaggaacgactCGGGTCAACGAAGCTGATGAAATGCTGCTGGAAGGTAAGCCAAGAACGTTATCACCGCAAAGGTTTGTGCGAAATATCATCGGACAACCAACAACCGCTACGGGGACGATGGCAAGTTTCGCCAAAGACGAGAATCTCAATAGTGAATTTCGCTGTCAGTTCTGCGCCCTCTCGTTCAACGAGAAGGAATTATTTATACGACATTTAGAGCGCGAGCATGGGATAGTTTGTAACGTGACTCCGAGTAATTCACCGCTCTTCGAACAAGTTAGGGTCAAGTTAGAACCGTCGTGTCAGATCCTCGAGGATCCCGAGAGTCCGGTCAATCTTTCGAGCCTGGGTATCAAAAGCTTCACCGCAAATTGGCTCAATTCTCAAGCCCAGgtgcaacaacagcagcagcagcaacaacaacaacaacaacaacaacaacaacaacaggtTCAATTACAGTCTCAAAATCCAGAAGATTGGACATCCCCCAGTCCCGTTACTTCCGTTCCCAATCATCTTCAAGCTCTCACATTTCCCGGTGCACTTGCCCAGTATCTTCCACTTCCGGGATTTTCCCTCACCGATGCCGGCCAACTAAGCCGGCCTCCCGTCGGTCCATCAGCAGCACCCATCAGGATCTTCAATCCCGACGCGTACTGTGATCTTTGCAACAAGGAATTTTGTAACAAGTACTTTCTAAAAACCCACAAAGCCAACAAGCACGGGATTTATGTGGACGCACCTTCGCAGAATCCCGGTGATAATGGTATGCCACCGGGGGGTATTGGTATGTCACCTGGCATGTTTACCGGAGCATTTGCCGCCGGTGGTAGCGTCGTTAAATCGGAACAATCACAGAGGCTCCAAGTCCCCACCCCTCTCGTTTCCGTACCCTTAAGCAACGCCGTAATCTGCGAGGTATGCCAGAAACGCTTCAAAAACGACGATTCGCTCAGAAAACACAAGCAAAAGGTTCACAACGAGTCGATCGATAATCAAGAATCCCATTCACTGCCAGCGACGACGAGCAGTAGCGTGGACGAAGATCGTCAAGTCTCTCGAAATAGTCCTAGCGGCATGGAGCCACTTTTCAAGCAGGAATTCGGGATCGAACAGGAAGACTCGAAATTTATGCCTGCTCCGCGCCATCTCTCGCCGCAATCCAGTCAACAAGCCAGAGACTCGGGTTTCAACGTCGATCGTCTCAGACGTCTCGGAGTCATCAATCCCGAGGCATTCTGCGAAATTTGTTGTAAGGAATATTGCAACAAGTATTTCCTACGAACGCACAAGATGAAGAGGCACGGTATTTATGTCCAAGAGAGCGAAAAACCGCCAAGCAATCCTGGTAATGCAGCGACGTGGCATCAGATTCAAACGAGCCCTCTGAATCTCATCGTGACCGATAGCAATAATGCCGGCGGCAGTTCCTCGGAATCTGGTGATCGTCCTGGAGAAGATTTCGAGTGTAAGCCTTGTGGCATTCGCTTTCAAACATTGGGACTGTACCGCGCTCATCGGGCCAAAATTCACGATACGGACGAGTCGTCCAAACAAGATTTCGACGCGGACCTGACCGATCAACGAGGCGATTCCATTTCCGAGGATTTGCAAAAACTTCAGACCATGATTTTGCAAATAAACGGCCTGGAAGCGAGTAAAACGTTGAACTGCGGAATATGTGGCAGAGAGTGCGAGAATTTCGGTGCTCTACGGACTCACATGAGACTCGAACACGGTGGAATCGTCGAGGAAATTTCCTCGCGGACTAACGAGAATTCTCTCAATGGGGGCACCTCTTCGACGTTCTGCACGATATGCGAGAAGGAATATCAAACTCCGGAAGCACTGAGGCAACATATCACTGAGGAACACGAACGGAGTAACAACAATAACCCTGACAATGTTTCGACGACGATGCCATCGCAGCCTCCGACTATTTCACCAACAGTTTCCGTTCAAACCCCCGTTCTTACGGTCACGACTCCCGTCGCTGTTCCAACTCCATCCGCGGGATTAGCGCAAATCCCAACGGCATCGCAGCCCGAGAGAAAAATCACTTCGATGACACCAACGTCgagttactgcgagctgtgtcGCAAGGAATTGTGCAACAAGTATTTCATGAAGACACACATGCAAAAGATGCACAACATCGAGATTGAGAACGGTTCGCAGATCGGTGGTGTAGTGTGCAACATATGTAACAAGGAATTGTGtagcaaatattttttacgcgTGCACAAGCAAAATACTCATGGGATCGTTGACGAGGCAAATACAGCTGCATCGAACAAGCAAGAAACTTTCGAATCATCGAGCAACGAGGATGCGGCATTGAAGCCTGATCAACTTGGTGATTTGAGCCATCGCTATTTCACTCATTTCACGGAGGTATGTCCGGTCTGTAGTCGTCGGTTTAGAAGTATAAAATGGCTCAAGGCTCATCTTCTCGGTGATCATGGAAAAGTGGGAATTGAAAAGTGGCGCGAGCTCGAGAATCAGTATCAAAACTTATCGAGATGCGGTGGCGGTGGCGGTGGCGGTGgcggcggtggtggtggtggtgcgaGTGCGAGGAGCGCGGGAGGTAGCGTTGCGGCCAGAGTAGCACCGCTAAATCAGAGCATTAAAATACCAAACGGATTGGAGATGGTTCAacaacaaatgaaaaataacgaTTACGTTGGGCTTGGAAATCAAGTACTGTCCAGCCTTTTTGGTGCCGCGACCGAGGACCAACGAAGTAAGAGTTATCGTTGCTCCTACTGCAACTTTACAACAACGGTGTTGCCATTTTTGTTCCTTCACGAGAGATCGCATACCAGCCCTCAGGATAATAATGCCAGTGCTGAAAGCGGTACAATCTTGTGTCCGATTTGCTCGCAGGCTTTTGGTAAACCGGAACTACTGCAACATCATCTGTTAACGCGCCATCAATTCTCGGGTTTGCTTTCCCAAATGCCTGCTTCATTCATCACCGATCCAAGACTTGCAGAGGCAGGCAATGTCGATAAGAATAATGAGATTTATGAGAAACTCGAGTacgaaggaaaggaggaacATGGTCAACCCGGTCCCCAAGTTTCCCTAGGAAACACCGAATCTCCGATCAAGAGCCAAAAACCTCAAGAGCCAGTGGTTCAGGTTACACCTCAAGGAGCTTACAAGTGTGCTCAGTGCGGCTACGCGAGCGCTAATCTCAACAGGATTAAGAAACACGTTAAAAAAGATCATAAAGCAATGGGTGACGCGACCGAAAGTGTTATCGACGAGTTGAGCAAGACACTGAGGGACGTTGCGAACAAGCACAAATTACCGGCCAGTTACGCAATGCCACAAGACATGAATTCGAATCCCGACGGTGGTACCACGGTAATGCAACCATTTTTGATCGAGGAACGGGATATTCCTGGCAAAATGGGCGATGAAATGAGCCAGGAGAAACGTTTTGCACCTGCCCTCGTTTATTTACCGGTAAGATCAAGGATCAACAATTCCCTTACGACCTCTTTCACCCTTAGTCCTGCCTGA
- Protein Sequence
- MTSTVAREQLGMMMDQQISELDSESSSSCEDREARKRLREDPDNNLGGSPKKRRKQTTPVRFPTSLMCNNGERNESENEEEEEEEEEEEEEQEEEEVVEEEEEQEEEEEEDDEDEDEDEEEEKVVEEDEQQLNENHFEGETKPDERRNNEGTTRVNEADEMLLEGKPRTLSPQRFVRNIIGQPTTATGTMASFAKDENLNSEFRCQFCALSFNEKELFIRHLEREHGIVCNVTPSNSPLFEQVRVKLEPSCQILEDPESPVNLSSLGIKSFTANWLNSQAQVQQQQQQQQQQQQQQQQQQVQLQSQNPEDWTSPSPVTSVPNHLQALTFPGALAQYLPLPGFSLTDAGQLSRPPVGPSAAPIRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDAPSQNPGDNGMPPGGIGMSPGMFTGAFAAGGSVVKSEQSQRLQVPTPLVSVPLSNAVICEVCQKRFKNDDSLRKHKQKVHNESIDNQESHSLPATTSSSVDEDRQVSRNSPSGMEPLFKQEFGIEQEDSKFMPAPRHLSPQSSQQARDSGFNVDRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGIYVQESEKPPSNPGNAATWHQIQTSPLNLIVTDSNNAGGSSSESGDRPGEDFECKPCGIRFQTLGLYRAHRAKIHDTDESSKQDFDADLTDQRGDSISEDLQKLQTMILQINGLEASKTLNCGICGRECENFGALRTHMRLEHGGIVEEISSRTNENSLNGGTSSTFCTICEKEYQTPEALRQHITEEHERSNNNNPDNVSTTMPSQPPTISPTVSVQTPVLTVTTPVAVPTPSAGLAQIPTASQPERKITSMTPTSSYCELCRKELCNKYFMKTHMQKMHNIEIENGSQIGGVVCNICNKELCSKYFLRVHKQNTHGIVDEANTAASNKQETFESSSNEDAALKPDQLGDLSHRYFTHFTEVCPVCSRRFRSIKWLKAHLLGDHGKVGIEKWRELENQYQNLSRCGGGGGGGGGGGGGGASARSAGGSVAARVAPLNQSIKIPNGLEMVQQQMKNNDYVGLGNQVLSSLFGAATEDQRSKSYRCSYCNFTTTVLPFLFLHERSHTSPQDNNASAESGTILCPICSQAFGKPELLQHHLLTRHQFSGLLSQMPASFITDPRLAEAGNVDKNNEIYEKLEYEGKEEHGQPGPQVSLGNTESPIKSQKPQEPVVQVTPQGAYKCAQCGYASANLNRIKKHVKKDHKAMGDATESVIDELSKTLRDVANKHKLPASYAMPQDMNSNPDGGTTVMQPFLIEERDIPGKMGDEMSQEKRFAPALVYLPVRSRINNSLTTSFTLSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00263801;
- 90% Identity
- -
- 80% Identity
- -