Rmeg027362.1
Basic Information
- Insect
- Rhimphoctona megacephalus
- Gene Symbol
- Prdm15
- Assembly
- GCA_963989365.1
- Location
- OZ022423.1:23333627-23337739[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.8 2.5e+02 3.2 0.0 2 23 253 274 252 274 0.94 2 14 0.0025 0.36 12.1 4.5 3 23 283 304 282 304 0.96 3 14 5.2e-06 0.00075 20.6 1.4 1 23 464 486 464 486 0.99 4 14 0.0057 0.81 11.0 0.3 1 20 490 509 490 510 0.95 5 14 0.00079 0.11 13.7 1.7 2 23 522 543 521 543 0.97 6 14 8.6 1.2e+03 1.0 0.8 2 20 548 566 548 568 0.91 7 14 5.9e-05 0.0084 17.3 5.9 1 23 572 594 572 594 0.96 8 14 2.2e-05 0.0032 18.6 1.0 3 23 617 637 615 637 0.97 9 14 0.17 24 6.4 2.9 1 23 642 664 642 664 0.97 10 14 0.00053 0.075 14.3 0.1 2 23 670 691 669 691 0.95 11 14 0.0044 0.62 11.4 8.7 1 23 696 719 696 719 0.96 12 14 0.00076 0.11 13.8 3.1 1 23 725 747 725 747 0.97 13 14 0.00017 0.025 15.8 5.9 1 23 753 776 753 776 0.97 14 14 0.03 4.3 8.8 4.5 1 23 781 804 781 804 0.95
Sequence Information
- Coding Sequence
- ATGCCACCTTTGAAAAAACTTGTGACAATTCGAGATGCAACAGTGTCAATAAATGACACggtaaataataatgaaagaaTCACGGTCGAATCTTTTTTGACAGTTTGTAGCGTGTGTGGCCAGGAGCATGCAACCGCCAGCTGTCGATTTTTCCTCTCTCTGAAATATgTCAAGGATGAGCCTTTGTTGTCCAGGGCCAGGCTGACTTTGccgaaaaatctcgaaattacaaaaatggcCGACGGTTCAACGACGGTGATAGCAAAATGTGATTTCCAGCAAGGAACGACTTTTGGTCCGCTGCAGGCTCAGCGAGACTGGACCATGAATCCCATGAACGATTTTCCCATTAAAGTTTTTGGGAAAGGCCCTATGGATACTTTTCATTTGGACCGTTCTAACGAAGATGCATCAAATTGGATGTGCTTTGTTTCTCCTGCGTCCAATTCCTTGGAACAGAATCTCGTTTGTTATCAAATGCAGAGGGACGTTTATTACACTGCTATGCGTTTCATCTCATCCGGTGAAGAACTGAGGGTTTGGTACGCTCCTTATTACgctttgaaaatgaaaatgccATTATACAACAAGGAGTTTGCAAATGTCAGCGAATATTTGGCAACGGAGGATAACAAGGTCGATCGGTTCGACGAAGATGCAGTAAATCCTCCAAAAATTGCACgtaaaaatattgaagaaatcGCTCAACGGTTGCCGGCCGAACAATTGGGAGCCCGGGGCGACAAAACTAGCTGGAATTGTAAGATATGCTCGGTCGTAATAAATTCGGTGATCGAGTATGCGAAACACTTGATGGAACATTACAAACCCCTGTCCGGAGTATTTTGTGACAtatgtaacaaaaaatttcacagaCTCTCGGTATTGCAAAAACACAAGCGGTTGAAACATCTCGAAGGAAGAACTAACAGCGACATTGTCGGTATTCCTACATCGGAAAATCAGCAACAGCAAAACGCTCAGACGATACTCATGAATATGAGCGATTCCGAAGGCATAACTTCAGAAGCAATGAAAGACATACTTGAAAAATTCAAAGCAGGAAAATCATTGACCGAATGCAATTTATTGCCCTCGGGGATTGAGGCAGAAAAAGAAAATCCAAACGAACTGTCTTTCCTCGACGCGCATTCGATAAGCGTCAATGATCTCCTGCACAACAACGCCACATTGATCGAAAATTCGTCGTTGAAATCAATCTTGGAAAATCAATGCTTAAATATGAGTCTAGAGGCGATAACGGACTCGATGCTCTCGGACAATATAAACGGCGCTGAATCCGTCAAATTCAACGTCGAAGAATTAGCCTCGGAGTTTTTGGACATAACACCGGCGGACGTCGAGAACATTAATCGTAGGGTTGTCAATTTTCAGTGCGACATATgcgaaaaaaagtttggaaagGCTGATTATCTCTATCGACATTTGAGAAAGCACACCGGGGAGTTTATCTGTCCGAATTGTCTAGGTGTATTCGCgcgaaaagaaaatttgatgtcGCACCTGTGCCCATCGCAACAGTTCGACCATAGAAAATATGTCGAGTGTTCGTATTGTCAGAAACTTTTTTTAACGAAGAAATATCTCAAACGTCACATGGCCAAACACACGGATTGGAACGTTTGCAAATGGTGTAGGAATTTATACACTTCGAGGCTCGAACTCGAGGCTCACAAGTGTCAAGCTCCCAAACACATTTGTTCCCAGTGTGGTAAACGATTCGTTCATCGGGAACATCTCAATCGACATGCCAAATTACACACGAATCCTAAGCCCGTACCAAAGGAAACGAAGAAGCAGAGGCTTCTAGAGGTAAAACCGGTGATATGCGAGAAGTGCGGTGATGTTTTTAAAAATCCTCACAGCTTGAAGCAACATTTGCGATCGCACGGAGAGAGAAAATTCGAGTGCGACATTTGCCACAGTAAATTTCACCGAATCGGTGTTTTGCAACAACACAAATCGATACATCAGAGTATTCAGATTCCCTGTCAAATTTGTGGAAAGAAACTCAAGAGCAAAAAGGCATTAAGCGTTCACGTACTTTTGCATGGTAACAGAAAATTTCATTGCGAAAAGTGTGACAAAAGTTTCTTTCAACGATGCAATTATCTAAAACACTATAGGCAAATGCACAGTGATAAAGTATTGCACAAATGTCCTCATTGTCCAACTGAATTTACGAGCGAATTGAGTTTCAATAAACACGTAGAGAGTCACGTAAAGCCGAGTGAATACGCGTGCAAAACCTGCCACAAAATTTTTCATCGGGAGTATCAATTAAAACGGCACGTTCAGACAAATCATAGCGGAATAGTGTACCGTTGTCCTTATTGTAAAATGACGGCTCGTTACCGTCACAGTATGAGAAGGCATTTTGAGCGTCAGCACAAAAGTCTCAGCGACGAATGGAACAAACCGGGTTTCGTAAATGatctcattgaaaaaacttCGTCCTACGTGTTGATCGAGCGAGCTATCGCACCGGATCAAAGCAGCCAACTCGCTCAAATACCTCATAGAAACAATGCTGCGACAGTTGAGGCAACCAGCAGCGATCCTCAAAGCTTAATCATATCGGTGACGAATTTGAACGAGACTCAATTCGGTGAAAAAAAAGCGCAGCAGGTTGGAAATAAGGTCCAAAACGAGATGGAATCGAGTTTATTGAACGGCCAAGAAACTGTGCTTCGAGTCTCAGAAATGGATCAGGCTGAATCAACAATCGAGAATAACGAATTAACGCCAAGCGAAGTTCCCCAATTGAGTATCAGCGATAACGAAGCAAATTTGGCGGAATCCGTACTAGACAGTACGCCCGTTACTGccgaatattaa
- Protein Sequence
- MPPLKKLVTIRDATVSINDTVNNNERITVESFLTVCSVCGQEHATASCRFFLSLKYVKDEPLLSRARLTLPKNLEITKMADGSTTVIAKCDFQQGTTFGPLQAQRDWTMNPMNDFPIKVFGKGPMDTFHLDRSNEDASNWMCFVSPASNSLEQNLVCYQMQRDVYYTAMRFISSGEELRVWYAPYYALKMKMPLYNKEFANVSEYLATEDNKVDRFDEDAVNPPKIARKNIEEIAQRLPAEQLGARGDKTSWNCKICSVVINSVIEYAKHLMEHYKPLSGVFCDICNKKFHRLSVLQKHKRLKHLEGRTNSDIVGIPTSENQQQQNAQTILMNMSDSEGITSEAMKDILEKFKAGKSLTECNLLPSGIEAEKENPNELSFLDAHSISVNDLLHNNATLIENSSLKSILENQCLNMSLEAITDSMLSDNINGAESVKFNVEELASEFLDITPADVENINRRVVNFQCDICEKKFGKADYLYRHLRKHTGEFICPNCLGVFARKENLMSHLCPSQQFDHRKYVECSYCQKLFLTKKYLKRHMAKHTDWNVCKWCRNLYTSRLELEAHKCQAPKHICSQCGKRFVHREHLNRHAKLHTNPKPVPKETKKQRLLEVKPVICEKCGDVFKNPHSLKQHLRSHGERKFECDICHSKFHRIGVLQQHKSIHQSIQIPCQICGKKLKSKKALSVHVLLHGNRKFHCEKCDKSFFQRCNYLKHYRQMHSDKVLHKCPHCPTEFTSELSFNKHVESHVKPSEYACKTCHKIFHREYQLKRHVQTNHSGIVYRCPYCKMTARYRHSMRRHFERQHKSLSDEWNKPGFVNDLIEKTSSYVLIERAIAPDQSSQLAQIPHRNNAATVEATSSDPQSLIISVTNLNETQFGEKKAQQVGNKVQNEMESSLLNGQETVLRVSEMDQAESTIENNELTPSEVPQLSISDNEANLAESVLDSTPVTAEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00262886;
- 90% Identity
- -
- 80% Identity
- -