Basic Information

Insect: Rhimphoctona megacephalus
Gene Symbol: salm
Assembly: GCA_963989365.1
Location: OZ022422.1:14142463-14154628[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.3e-06 0.00075 20.6 0.9 1 23 457 479 457 479 0.98

2 9 1e-05 0.0015 19.6 2.1 1 23 485 507 485 507 0.98

3 9 0.066 9.4 7.7 3.8 2 23 945 966 944 966 0.98

4 9 4.6e-08 6.5e-06 27.1 0.6 1 23 972 994 972 994 0.97

5 9 6.4e-05 0.0091 17.2 2.6 1 23 1004 1026 1004 1026 0.98

6 9 0.0022 0.32 12.3 1.9 2 23 1395 1416 1394 1416 0.97

7 9 0.014 2 9.8 1.1 1 15 1422 1436 1422 1436 0.94

8 9 1.1e-06 0.00015 22.8 2.1 3 23 1644 1664 1642 1664 0.96

9 9 2.1e-07 3e-05 25.0 0.9 1 23 1670 1692 1670 1692 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.3e-06	0.00075	20.6	0.9	1	23	457	479	457	479	0.98
2	9	1e-05	0.0015	19.6	2.1	1	23	485	507	485	507	0.98
3	9	0.066	9.4	7.7	3.8	2	23	945	966	944	966	0.98
4	9	4.6e-08	6.5e-06	27.1	0.6	1	23	972	994	972	994	0.97
5	9	6.4e-05	0.0091	17.2	2.6	1	23	1004	1026	1004	1026	0.98
6	9	0.0022	0.32	12.3	1.9	2	23	1395	1416	1394	1416	0.97
7	9	0.014	2	9.8	1.1	1	15	1422	1436	1422	1436	0.94
8	9	1.1e-06	0.00015	22.8	2.1	3	23	1644	1664	1642	1664	0.96
9	9	2.1e-07	3e-05	25.0	0.9	1	23	1670	1692	1670	1692	0.98

Sequence Information

Coding Sequence: ATGCAGCTGATGAGATGGAGCATCACCGGAAGGCTCGAGAGTCGCGGCATCAGTAAACCGAGACGCGACGGCGAGATCTGTCAGCAGGAACAACAAACGATTGCAAATGATACTTTATCGTGTCCGAGATATTCCGAAGAAGAAAATGACACAGCGTCAGAGGGGGGAGAGAGCAACAACGGAGGTTGCGTTGTTGGTGTCGAAGCCGTCGGAAACTCCGTTGACGACGCTGCGGTTGATCTCACGGCAGCCCGTTCGAATCACGACGGTGAGGAGGAAGACGAGCGGGAAAACGACGAATTGCCTATGGACGAGGATGAGACGGACGAGCTCGTGGACGAGATTGAGGAGCACGAGGACGACGAGGAGGGTTCACGAAAGCAAATGCGTCATCGGCAAGATGCCGAGAACAACAACAGTTTTATCGGTGAGGGCGGCCCAACGACAAGTGGTGCATTCCCGACACCTGGCACGAGTCACGTCACCCTCGAGGCACTCCAAAATACAAAAGTTGCGGTTGCTCAATTTGCAGCAACAGCACTTGCTGGTAGTGCCGACAGTGAGGCAGCTCTTCAAGATCTCGCCTTGTTGCAGAGCACCCTCTACACCCTTCAGCATCAACAGGTCTTTCAGTTACAGTTGATAAGCCAGTTGCAGCAACAATTGTCGATAACACACGCCGGAGGACAGCCGGTTGTTGTAACTCCCTCCCAACAAATATTAAGCAATAGCGGTATCGCGTGCGGCAATCCAACGGTCGATACAATTCAGTCGGTGACTCCTACGACAAACCCCGAAACGAATTCATGCAAAGAAACGTCATCGACCTCGCCGTTGATACAGGCCAAATCAATCGCGAGTCTTACCTCACCACCGTCCTCACGACCGCCGAGTCATCATCAAACTTCGTCCTCACCGCTGTTGACACCCAGTAGTCTTGCGCAACAAGATCGGCCCGTTGATTCGTGCAGTACATCACCCATAGCTCTACCATTGCCCCCCACTTCAAGTATGTCACTGGTACCGTCAGCAGCAGTCACGAGTAACAGCAGTGAAATTGGTGTAAACAATGACAGTCCGATGACTCAAACAGCCTCGACACCGATGTCACATCAGATGCACATGTGTTCGATAAGTTCCTCATTAGCGTCATCGATAATCACCAACAACGATCCGTTGCCTCTCCACGAGCCGAATACCTTGGAGATGTTGCAAAAACGCGCCCAAGAAGTACTGGACAACGCTAGTCAGGGCTTGCTGGCGAACAATCTAGCGGATGAGCTAGCTTTTCGTAGTGGCAAGGGTTCGCGTCTCTCGCCGTACGATTCCAAGTCGGGTGGTGGTGGACGGGGCGAGCCATTCTTCAAGCATCGATGCCGTTACTGCGGCAAGGTCTTTGGAAGCGACTCGGCACTACAGATCCACATAAGATCTCATACAGGTGAGCGTCCCTTTAAGTGCAACGTCTGCGGAAGCCGATTCACCACCAAGGGAAACCTCAAGGTCCACTTTCAGAGGCACACGGCAAAGTTTCCACACGTTAAAATGAATCCGAATCCCGTGCCCGAACACCTCGACAAGTACCATCCTCCCTTGCTCCAGCAGTTAGCTGCCTCAGGTCAGAGACCTATGCCGTCCCCACCGCCGCCGCCACCGCTACCTCCGCCACCTCATCAAGCACCGTCCCAACAGCATCACCAGCATCAGCAACATCAGCAGCAGCTACAACATCACGCGGCTGCAGTAGCGGCCGGAAACTTCCATCCAGCAGCAGCAGCCGCGGCAGCAGCAGCGGTAGCTCATGGGTTTCTTCCACCTCAGCCACCCTTGCCCCTGAGTCTTGCCCTGCCTGGTATGCCACCCCTCTATCGTGCCCCGATCGTTAATCATCGTGATGATCAGGAGATCCCGGAGAACCTCAGTAAACCGGCTCCCTCGATCTCTCCACAGTCACCCAATCCCTCCATTCATTCGAATTCGCATCATTCCTTTCACGAGCAACAACAACGCCAACAACAGCAGTTCCAACAACAAATTCCCCCTGCACGGACTGAATCTCCTAGAGCTAATTGCGACGAAATAAAACTAGAGCAACGATCACCAGTGCAAGAGCTGCAGCCTTATCAACCTCACCGACCTGCGAGTCGCGAACCTGAAGATAGTATAACACCAAAGCGTGAGCCCGAAGAACCTGAAGAAATCCCGGACGATGACGAGTTCGACGAGACGTCGCAACGTTATCTAAATCCACCAACATCACCTGCTAATCATACGATCTCGCATGCACAATCGTACGAAGATTGTAGTATGGATAGTAAAATGAGTGGACGACTTGAACCTGACACCGATATTATGGATGCCGATGAGGAAATGGAAGAACAACCGGAGAATCTTTCAGGTCGTGGAAGCGGCGGTGGCGGTGGTAGTGGAGGTGGTGCAAGTCGCTTGGCCCTGCCACAAGGAGTTGGTATGAGTGGTGGCGGTGGTGCTGGTGGTGGCGGTGGGTACCCGGGTGCTTCTCCAGCTAGCAGCAGCGCCAGCAGCGGAAGTCTGCAAACTTCTTTCGCTGGTATTCTTTTTCCTGGTCCACCGTCCCATCATCAGTTGCCTCATCATCCATCCTCGACAACCGGTACAACGCCAACTGGAACGGGTGGTAACGAAATGATGGTAGACCCTGCTCGAGATCCAGCCATTTACTCTAGCCTCCTTCCGAGACCTGGTAGCAACGACAATTCCTGGGAGAGCCTCATCGAGATAACGAAAACTTCAGAAACATCGAAACTTCAGCAGCTCGTAGATAACATTGAACACAAACTCACCGATCCCAATCAGTGTGTTATATGTCATCGTGTTTTGTCCTGCAAGAGTGCATTGCAGATGCACTACAGAACACACACGGGTGAACGTCCGTTCAAATGCAAGATATGCGGTCGCGCTTTCACAACAAAGGGAAACCTCAAGACTCACATGGGTGTTCATCGGGCGAAACCTCCCTTAAGAGTGTTGCATCAGTGCCCTGTTTGTCACAAAAAATTCACCAATGCACTCGTTCTTCAGCAGCACATACGTCTCCATACCGGTGAACCTACGGATTTGAGTCCCGAACAGATACAAGCTGCGGAAGTGAACGAATTTCCACCAAGTTATCCTCATCATCCTCTCACTTCATTTCTTCCGCAAGGTTTTCCAGGATTACATCCCGGCGGACCCGGTTTCCCATTGGGGTTTCCACCTTCGCGTCTGCACTCTCTAGATCGACATTCTCTCGAAAACGATCTAGACGCAAAGGAACAAATGCATCAACATCAACAGCACGCCCACCGTCATCATCAGATGCGATTGCAGCAGCATCAAGCTCAACTGCAAATGCAACAGAGGATGTATCTTGAGGATGTACAGAGTGAAGATATGGAGGATCAGGAGGACGAAGAGGAGGATCGTCGTGAGGACGACGAGAGGTGCGAGGACATGATGGCCCGTGACCGAGGATCAGATGACGAGGACGAAGATGATGTCAACGATTGCGACGACAATGACAGTAGAAAAGACGAAATTGTATCAAGAGCGACGAGTCTTACGATACCAAGTTTTTCGACTTCATTAGCGGCCCTTGAAAATCAAGTACGCACCATTACGACAACTGCCTCGGGGATGGCTCCAACgagtaataacaacaataatagttCAGTTGGCTGTTCACCAATACCTGTGCATCGATATAACGGTAGCGAAAAGAGTGTTAGTCCAGTAAACAGCacgggtggtggtggtggtgcacCTCTTGATCTAACACCAAGGGCATCGTCGACACCGGCTTCTTCCATTGTGTCCGCTACAACTACACCACCCCCAACTCCACAAAGCCTTGGGCATCATCATTCGCATCATCCGTTCGGAATGTTTGCAGGCCTCTTGCAGGCTGTATCGTCGCAAACTCCAAGTATCATCGGCAATAGCATTCAACATAGTGGCCCGGCAGGCGGTGGAAGTGGCGGTGTTGCGATAAACAGTTCTGCCGTAAATGTCTCCTCGTCGATTAACAACGCCGTTAGTCCAGGTGGTGGCAGCAACAGCGGTGGACCTCTTGCCTCGCTAACAACATCCGCCGTACTCGCAGCATCCTCCACCTATAATCCGCTCGGCCTGGCTGTCGGAGGGCCAGCAGTACGTGGCAACACCACGTGTAATATCTGCTACAAGACATTCGCGTGTAACTCGGCACTGGAGATTCACTATCGGAGCCACACGAAGGAGCGACCCTTTAAATGCAGCATTTGCGACCGTGGCTTCTCGACAAAGAGTGACGGCACATGGATGAAATCGTGTAACTGCATGGACCATCCAAATCTCTTTACCGGAGATATCCTACAATCAAATCCACCGACGTCATACCACTCGCTCGGGAGTACTGCCATACCTGATGGTGGTGTCTTGACAACCGGAAGTCAGGATATCAGGCCAAAAAGGAACAGGCGGCGGCGGACTGAGGAACAGAAAAGCCGGGGGCGGACAGGGACCGGAGGGGGGCGAGGGCTGACGTCTGCCTATGCTGCCGTCCGCCTGCCCCCGCTGATGCCCCCCGCCCTCGGACTTCTAGCCTCGGACCACGTCTTCCTGGGAAACATGAAGCAGCACATGCTGACCCACAAAATCCGTGATATGCCACCGCATTTGTTCAACGATTCGAAGCAATCGggtcaacagcaacaacaatcaACACAGCAACAACAGTCGCAAGAACTGGAAAACTCGAGAAGTCCAATGTGCATGGACGAATCGAGTCTTCCACCACCACCGCCTCCTCCTCCACCCCCACCGCCACCGATGCCACCCTCGTCGATGGAATCACCAATGCCTGTAAAAAGATCACCATCAGAAGGTGATTTACCGGCTCCCAAAAGGCCCAGCATGTCGAGCAAGCACTTGTGCCAGGTTTGCAATAAGAATTTCTCCTCGTCCTCGGCGCTCCAGATCCATATGAGAACTCATACGGGCGACAAGCCTTTTCGATGCACCGTCTGTCAGAAGGCCTTCACGACCAAAGGCAATCTTAAGGTTCACATGGGAACTCATATGTGGACGAACGGAGCATCACGAAGAGGTCGACGAATGTCTTTGGATCTTCCACCTCTGCCAATAACACCCAAGGACTCGGAGTTTCTTCAGCGTCGTCCTGATCTTTTTTATCCATATTTACCGGCCCCGTTTCTTAACGGAGTACAGCAAAAACTGAACGAGATATCGGTCATTCAGAGTAACAACGGTTTACCAGCGCATCCGGTGAGCGCGGGAAAATACGCCGGTCTTTTTGGTTCGATTTATGGTGGTGGTGGGTTTCCACTGGAGAAGCAGCCGATGGCACCGAGCAACGGTCCACTGTCGGATGGAAAATCATCATTACCTTCGGGTTCGATGCTTTTCCAAACACCCTCGCCATCGCATTCGCCAGGTACACCTTCGTCGAACACCGGAAATCAGAATTCGGCGAGTGTACCAGCGTGGAGCGGAGAAACTCTGCAGCATCACTTTGAGCGTGACGTTACTGTATCGAGACCGGAGAACAATTCGACACCACCATCGGCAAGAATTCAACCGCCATCAGCGCCAAGGGGTGAAGGACTTGCTGCgtga
Protein Sequence: MQLMRWSITGRLESRGISKPRRDGEICQQEQQTIANDTLSCPRYSEEENDTASEGGESNNGGCVVGVEAVGNSVDDAAVDLTAARSNHDGEEEDERENDELPMDEDETDELVDEIEEHEDDEEGSRKQMRHRQDAENNNSFIGEGGPTTSGAFPTPGTSHVTLEALQNTKVAVAQFAATALAGSADSEAALQDLALLQSTLYTLQHQQVFQLQLISQLQQQLSITHAGGQPVVVTPSQQILSNSGIACGNPTVDTIQSVTPTTNPETNSCKETSSTSPLIQAKSIASLTSPPSSRPPSHHQTSSSPLLTPSSLAQQDRPVDSCSTSPIALPLPPTSSMSLVPSAAVTSNSSEIGVNNDSPMTQTASTPMSHQMHMCSISSSLASSIITNNDPLPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRSGKGSRLSPYDSKSGGGGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQLAASGQRPMPSPPPPPPLPPPPHQAPSQQHHQHQQHQQQLQHHAAAVAAGNFHPAAAAAAAAAVAHGFLPPQPPLPLSLALPGMPPLYRAPIVNHRDDQEIPENLSKPAPSISPQSPNPSIHSNSHHSFHEQQQRQQQQFQQQIPPARTESPRANCDEIKLEQRSPVQELQPYQPHRPASREPEDSITPKREPEEPEEIPDDDEFDETSQRYLNPPTSPANHTISHAQSYEDCSMDSKMSGRLEPDTDIMDADEEMEEQPENLSGRGSGGGGGSGGGASRLALPQGVGMSGGGGAGGGGGYPGASPASSSASSGSLQTSFAGILFPGPPSHHQLPHHPSSTTGTTPTGTGGNEMMVDPARDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLSPEQIQAAEVNEFPPSYPHHPLTSFLPQGFPGLHPGGPGFPLGFPPSRLHSLDRHSLENDLDAKEQMHQHQQHAHRHHQMRLQQHQAQLQMQQRMYLEDVQSEDMEDQEDEEEDRREDDERCEDMMARDRGSDDEDEDDVNDCDDNDSRKDEIVSRATSLTIPSFSTSLAALENQVRTITTTASGMAPTSNNNNNSSVGCSPIPVHRYNGSEKSVSPVNSTGGGGGAPLDLTPRASSTPASSIVSATTTPPPTPQSLGHHHSHHPFGMFAGLLQAVSSQTPSIIGNSIQHSGPAGGGSGGVAINSSAVNVSSSINNAVSPGGGSNSGGPLASLTTSAVLAASSTYNPLGLAVGGPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCSICDRGFSTKSDGTWMKSCNCMDHPNLFTGDILQSNPPTSYHSLGSTAIPDGGVLTTGSQDIRPKRNRRRRTEEQKSRGRTGTGGGRGLTSAYAAVRLPPLMPPALGLLASDHVFLGNMKQHMLTHKIRDMPPHLFNDSKQSGQQQQQSTQQQQSQELENSRSPMCMDESSLPPPPPPPPPPPPPMPPSSMESPMPVKRSPSEGDLPAPKRPSMSSKHLCQVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSNNGLPAHPVSAGKYAGLFGSIYGGGGFPLEKQPMAPSNGPLSDGKSSLPSGSMLFQTPSPSHSPGTPSSNTGNQNSASVPAWSGETLQHHFERDVTVSRPENNSTPPSARIQPPSAPRGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00439683;
90% Identity: iTF_00266657;
80% Identity: -