Rmeg016635.1
Basic Information
- Insect
- Rhimphoctona megacephalus
- Gene Symbol
- klhl36
- Assembly
- GCA_963989365.1
- Location
- OZ022418.1:20000959-20005160[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.3e-05 0.081 13.4 0.0 3 38 206 241 204 247 0.83 2 4 2.6e-10 2.3e-07 31.2 0.0 5 39 258 291 255 298 0.85 3 4 0.0076 6.7 7.3 0.0 7 34 312 338 308 344 0.84 4 4 8.9e-12 7.8e-09 35.9 0.1 3 39 368 404 366 408 0.93
Sequence Information
- Coding Sequence
- ATGTCAACAACAATAATAGAGAACCAAGAACAACCTCAATACGAGGAGAGCTGCTATTACAAATGGACCGATCATCAGACTCATTTATCGGACGTTGTTCGACAGCTTTTAGAAGAGGAATGCATGGTCGACGTGACTCTCGTCGCCGATGGCGAACGCATACAAGCTCATCGTATTGTACTGTGCTCTTGCAGTACTTTGTTTCAAgagATATTCAGTCAAGCGAACGAAGAACACGCGACCATAATATTAAGTGACATATCAGCGCAAGATGTAAGATCGATTGTGGAATTTAGTTATCATGGGGAAGTAAGAATCCCTGTTGAGAACATCAGCAACCTTTTGGAGGCTGCTCATTCGTTAAGAATTTGCGGTCTTATGGAgATCGATGGTTTGGACGAAAACGATGCAATCATAAGTGTGAAAGATTCGAAGGATGAAAGTACCGAGTGTTTGGAAGATTTTGAGGACTGCATTGAAAATGACACAGAAATATTGGACGAGGATCCGCTTTCATACAAAGATGTAAAACAAAGTTGCGAGCCAATGGAAAAGGGGATatcaaataaaggaaaaaagcgTCAAAAAAGTAGTTTGAAACGCGAGTACAATGATGAGATGCTTGCCTCAGCGATAAATGACCTTAAATCTGGCCAAACCCTCGTTGAAGCTTCCATCAAAAATAATATACCACGTTCGACACTTTACATGAGAGCGAAAGCCCTGGGAATACAATTGAACGCTTCGCGAAACGAATATCCAGCAGAATGCATGAAAGCTGCCATTGACGCAGTCATCGAAGGCTCTAGTTTGCAACACGCTTCCGACAAATTTTTTATACCCAAAACTGTTCTGTGGCGACGCATACAAAAAGAAGGATATCAAATCTTACGCACTGAAGTCAAACGCTCCTACGGTCAGGAAAAAAGAGAAGCTGCCGTCAAAGCCCTTCAACGGGGAGAAAATTTAACTAAAGTTGCTCAACAATTTCAGATACCGAAAACGACGTTATTTCGTGAAAAAGTGAAGCTCGTTGACGAGGGCAAATTGCCAGAATCTTTTTGGAAGAAGCGAAAGACCGGAAACGAGGAATGGAAGAAAACGCGTTTGGAGGAAGCGGTTGCAGTTTGCAAAGAGGGCAAAATGTCGCAAGCAGCAGCGGCGATGAAATATAGAATTCCGAAAACAACGATTTGGCGACGATTGCAACAGGAGGGAAAAAATAATGCACGAGGAACTGCGAAAACTGCGGAACGTTCGTTAAGCGAGTacgaaatttcggaaaaaaacgaACAGGACAGTTCCGAATTTGCTCTTTGCGAGgtatcTTCGGAAATTCCAATGACCTACATAGACTCGAATTTACCAGCTGATTCTGTAATAATATTGACATCGGAAGACGTCGATGGCTTGAATCTTGACGAAAATAGACAATTGATCGTTAATCAGgattctGAACAAGAATACGTTCGATGTGCTTTGAACATAACCGACGATACGGAAGTCTCAGATTACCAGCAAGCGGAAAGCTAA
- Protein Sequence
- MSTTIIENQEQPQYEESCYYKWTDHQTHLSDVVRQLLEEECMVDVTLVADGERIQAHRIVLCSCSTLFQEIFSQANEEHATIILSDISAQDVRSIVEFSYHGEVRIPVENISNLLEAAHSLRICGLMEIDGLDENDAIISVKDSKDESTECLEDFEDCIENDTEILDEDPLSYKDVKQSCEPMEKGISNKGKKRQKSSLKREYNDEMLASAINDLKSGQTLVEASIKNNIPRSTLYMRAKALGIQLNASRNEYPAECMKAAIDAVIEGSSLQHASDKFFIPKTVLWRRIQKEGYQILRTEVKRSYGQEKREAAVKALQRGENLTKVAQQFQIPKTTLFREKVKLVDEGKLPESFWKKRKTGNEEWKKTRLEEAVAVCKEGKMSQAAAAMKYRIPKTTIWRRLQQEGKNNARGTAKTAERSLSEYEISEKNEQDSSEFALCEVSSEIPMTYIDSNLPADSVIILTSEDVDGLNLDENRQLIVNQDSEQEYVRCALNITDDTEVSDYQQAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00262572;
- 90% Identity
- iTF_01299406;
- 80% Identity
- iTF_01299406;