Rneb001151.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- stc
- Assembly
- GCA_948150685.1
- Location
- OX411308.1:26420238-26452246[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2 4.8e+04 -4.3 1.6 15 18 270 273 269 274 0.75 2 18 1.9 4.5e+04 -4.0 1.6 15 19 297 301 296 301 0.81 3 18 0.012 2.9e+02 3.0 0.4 4 10 330 336 329 338 0.96 4 18 0.00041 9.7 7.7 20.8 4 19 344 359 342 359 0.93 5 18 0.65 1.5e+04 -2.5 0.5 5 10 384 389 384 389 0.94 6 18 0.00066 16 7.0 15.7 3 18 397 412 395 413 0.91 7 18 2 4.8e+04 -5.0 3.7 8 13 418 423 417 424 0.79 8 18 1.9e-08 0.00045 21.5 13.6 1 18 452 469 452 470 0.98 9 18 8.4e-09 0.0002 22.7 11.1 1 19 511 533 511 533 0.88 10 18 0.0018 43 5.6 8.4 1 11 573 583 573 584 0.96 11 18 2 4.8e+04 -4.4 1.1 4 10 588 594 588 594 0.58 12 18 7.3e-11 1.8e-06 29.2 12.3 1 18 600 617 600 618 0.97 13 18 2 4.8e+04 -4.2 1.2 6 10 647 651 646 651 0.77 14 18 2 4.8e+04 -10.1 16.6 1 19 657 675 657 675 0.75 15 18 0.66 1.6e+04 -2.6 0.2 9 13 693 697 692 698 0.79 16 18 8e-05 1.9 9.9 14.4 1 17 711 726 711 726 0.96 17 18 0.94 2.3e+04 -3.1 1.5 5 10 730 735 730 735 0.89 18 18 0.0034 81 4.7 16.1 1 18 742 761 742 762 0.82
Sequence Information
- Coding Sequence
- ATGTCCAACTGGGATAGGCCCCAAAGTAGTGGTAGCTCATATCAGGGATATGGTGGTTATTACAACCCTCAGTCACAACCAGACAATACAAATTTGTATGGGAATTTATATCAGCAACCTTACTATAATGGATCCTGTTATAATGGCCCATCTCAGGCGTTTAGAAATGGTTACCAAGGAAATTTCCAAACTCCTCCAACATCTGCAGAAGAATTTTTTAGGATCATTCAAGAACAGCAACACCAAGAAAGTCAACATGAATATAGCACTAGAAGTATAGACTATGACTCCCTTGGCCGTGGATGCAATATTCCCACAATGGTTTTTCCATCATCTAATACTAGTTCAGGTGGAGACCAAGTACAACAAGGTAAAAGAAAGATCTATGAAAATACTAAAGGAGGAAGAGGTGGAGGACGATACCAGCATGGTGCTGTTCCTAGGCAACAGAACAACTTCAGGCGCGGTGGACACAATAACATTAAAAAAAGTGTACAAAATCAGCATTGGGCTGCGGTTCCAAATGGTGATGTCATTGGTGATGATTCGAAGGTAGAGGAAATAAAAAATTCATCATCAAAGCGTGGAAAAGGTTTTGCTCAAAGAAATACCAACAGATTTAATAGTTACCAAAAAGATAGCGGTACAACTAAGCGTGATAACTTCAGTAAAGATTGGCGAGCTAGAGGGAAAGGTAAAGGAAATGAGGAGTGCCAGCGTGACCGTTTAACATCTCAGCTGTATTCTGGTGGGTTGGAATGTTTAGTCTGTTGTGAAAGGATGAGACAAGCAGATCCTGTTTGGTCTTGCCCAGCTTGCCATCATGTCCTTCATCTCCGTTGTACTGTTCGTTGGGCGTCATCTTCAAGAGCAGACAACGGTTGGAGATGCCCAGCTTGCCAAAATGTTACTGATGCAATACCTACAGATTACAAGTGCATGTGTGGAAAAGTGATTAATCCGCAATGGGTTCGAGGAGAAACTCCTCATACTTGTGGACAAGTTTGTGGAAAAGATCGTGGTTGTCCGCATTGTTGTACCCTCCTATGCCATCCTGGTCCTTGCCCACCATGCTCAGCTAACATCGACAGGTACTGTGGTTGTAACAGAACAAAACAGGTTGTTCAGTGTTCTTCAAGAGTTGAATTAACATGCGATGCTGTATGTGAAAAGTTGCTCAACTGTAAAGTTCATCATTGCACAAAAGGATGTCATACTGGTCCTTGTGATTCTTGTAATGAGACCGTTCATCAAAAATGTCATTGTGGACAAGAGGAAAGAGATGTACCTTGTGATCGTGCCGACATTGAAGCTGTCTACAGTTGCGACAAGTTATGCGATAAACTTTTGGCTTGCGGACAGCATAAATGTACTAAGACTTGTCACCCAGGTTCCTGCTCTGTTTGTGTATTATCTCCAGATGTAGTGTTAACTTGCCCTTGTGGCAAGAAACCATTGCCTTCTGGCTCAAGGAAGTCCTGCAAGGATCCAGTACCGCTTTGTGGAGCAGTTTGTGGAAAGGTCTTATTGTGTGGTGCAGCAGGAAGAAAACATACTTGTGCGGTATTGTGCCACAATGGTGACTGCCCACCGTGCCCTGAAACTACGTCAGTTATGTGTCGGTGTGGAGCTATGGCTAAAGAAGTTGCCTGTGCTGGCTTGGATTCGCGTCCAGATGATGCCCGCTGTTCTAAACGATGTACAAAAAAAAGAAGTTGTGGAAAACACAAATGCAATCAAGCTTGTTGCATAGAGATTGACCACTTTTGTCCCCTTCCATGCAATAAAATGTTGAGTTGTGGAAGACATCGTTGCCAGGAACTCTGCCACCGAGGCAACTGTCGACCCTGCCTTGCTGCGAGTTTTACTGAGCTAAGCTGCGAGTGCGGAAAAGCTGTGCTCTATCCGCCAGTCGCTTGCGGGACTAGGCCTCCGGAGTGCAAGGCGCCTTGCTCTCGTGATCATCCATGTGGCCATCCTCCTACTCATCATTGCCACTCTCAGAGCGAATGTCCCCCGTGCTCAGTTCTAACTACTAAATATTGTTTTGGAGCACATGAGCTAAGAAAAACAGTTCCTTGCCATATTGGAGAATTTTCCTGCGGACGTGCTTGTAATAAAAAATTAGACTGCGGCCATTGTTGCATTAAAATCTGCCATTCGGGGCCTTGCACACCAGAGGGTACCAGATGCACACAGCCATGTACTGTACCAAGACTAACTTGTGGCCACGAGTGCGCTGCACCTTGTCACCCTGGGCAGCCTTGCAACCCCCAGCCGTGTCAGTCAAAGGTTGAGGTTCGATGTGAATGTGGAAGAAGAGTTGTAAAAAAAAGTTGTTCAGAAAATAGTTCGGAATATCAACGCTTAGCTACAGCTCAGCTAGCATCTCAAATGGCTGATGTTCGTCTTGGAAAGACAGTCGACCTCAGATCTTCTTCTAAGCCGGTCTATAAGCTTGAATGTACAGATGAATGCAAAATAGCTGAAAGAAACTTACGTCTAGCAATTGGTCTTCAGATATCAAATCCGGATCTCTCATCAAAGCTGTGTCCAAGATACTCTCAGTTCCTAATGACATGGGCAAAAAAAGATCCTAAATTTGCTCAGAATGTTCATGATAAGCTTACAGAAGTTGTACAACTGGCTAAAACATCAAAGCAGAAAAGCAGAAGTTATTCTTTCCCCTCTATGAAATCTGAAAAGAGGCAGTTTATACACGAGTATAGCGAGCACTTTGGGGTTGAAAGTGTTGCCTACGATGCGGAACCTAATCGGAACGTAGTTGCTACAGCTTATAAGGATAAGTCATGGCTTCCTAGTTACTCAATTCTTGAGATGTTGGAGCGTGCAGCGGGTAAAAGAAAGGTTCCTTCCCTTCTTCCATCATTAAAAAAAGATAGCAAAGAAGAGAGTGTGATGGTTCCCGTTAGACTGAGGCCCAAATCAGAAGATGCTAAGGCGGAAGATCAGAAAGCGGATGAGCCACCACCAATAGATTATTTTGATTATGTTAATCCCTCACAGTCTTAG
- Protein Sequence
- MSNWDRPQSSGSSYQGYGGYYNPQSQPDNTNLYGNLYQQPYYNGSCYNGPSQAFRNGYQGNFQTPPTSAEEFFRIIQEQQHQESQHEYSTRSIDYDSLGRGCNIPTMVFPSSNTSSGGDQVQQGKRKIYENTKGGRGGGRYQHGAVPRQQNNFRRGGHNNIKKSVQNQHWAAVPNGDVIGDDSKVEEIKNSSSKRGKGFAQRNTNRFNSYQKDSGTTKRDNFSKDWRARGKGKGNEECQRDRLTSQLYSGGLECLVCCERMRQADPVWSCPACHHVLHLRCTVRWASSSRADNGWRCPACQNVTDAIPTDYKCMCGKVINPQWVRGETPHTCGQVCGKDRGCPHCCTLLCHPGPCPPCSANIDRYCGCNRTKQVVQCSSRVELTCDAVCEKLLNCKVHHCTKGCHTGPCDSCNETVHQKCHCGQEERDVPCDRADIEAVYSCDKLCDKLLACGQHKCTKTCHPGSCSVCVLSPDVVLTCPCGKKPLPSGSRKSCKDPVPLCGAVCGKVLLCGAAGRKHTCAVLCHNGDCPPCPETTSVMCRCGAMAKEVACAGLDSRPDDARCSKRCTKKRSCGKHKCNQACCIEIDHFCPLPCNKMLSCGRHRCQELCHRGNCRPCLAASFTELSCECGKAVLYPPVACGTRPPECKAPCSRDHPCGHPPTHHCHSQSECPPCSVLTTKYCFGAHELRKTVPCHIGEFSCGRACNKKLDCGHCCIKICHSGPCTPEGTRCTQPCTVPRLTCGHECAAPCHPGQPCNPQPCQSKVEVRCECGRRVVKKSCSENSSEYQRLATAQLASQMADVRLGKTVDLRSSSKPVYKLECTDECKIAERNLRLAIGLQISNPDLSSKLCPRYSQFLMTWAKKDPKFAQNVHDKLTEVVQLAKTSKQKSRSYSFPSMKSEKRQFIHEYSEHFGVESVAYDAEPNRNVVATAYKDKSWLPSYSILEMLERAAGKRKVPSLLPSLKKDSKEESVMVPVRLRPKSEDAKAEDQKADEPPPIDYFDYVNPSQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00764351;
- 90% Identity
- iTF_00764351;
- 80% Identity
- -