Rneb008196.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- -
- Assembly
- GCA_948150685.1
- Location
- OX411306.1:2127992-2128483[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0026 21 6.7 0.1 18 48 3 33 1 36 0.87 2 5 0.0049 39 5.8 0.7 22 48 36 62 33 64 0.86 3 5 0.0003 2.4 9.7 0.4 18 48 61 91 59 93 0.89 4 5 7.9e-07 0.0063 18.0 0.4 18 49 90 121 88 125 0.89 5 5 1.5e-05 0.12 13.9 0.4 18 48 119 149 117 153 0.91
Sequence Information
- Coding Sequence
- atggctcgacatacaggagagaagtcccatcaatgtccttactgtgactataaatcagttcaatctggatctttgaaaaatcatataatggtccatcatacaggtgagaagtctcatcactgtcctcactgtgattataaatcagtaaattctggaaacatgagaagtcatataattgcccgtcatacatgtgagaagcctcatcaatgtccttattgtgattataaatcagttgaatctggaactatgaaaagacatataatgggccgtcatacaggtgagaagcctcatcaatgtcctaagtgtgattataaaacattacaatctgcaaatatgaaaagacatataatggcccgacatacatgtgagaagcctcatcaatgtccttattgtgattataaatcattacaatctggaactatgaaaagacatataatggcccgtcatacaggtgagaagttcaatgtcctcactgtgattataaatcagtaa
- Protein Sequence
- MARHTGEKSHQCPYCDYKSVQSGSLKNHIMVHHTGEKSHHCPHCDYKSVNSGNMRSHIIARHTCEKPHQCPYCDYKSVESGTMKRHIMGRHTGEKPHQCPKCDYKTLQSANMKRHIMARHTCEKPHQCPYCDYKSLQSGTMKRHIMARHTGEKFNVLTVIINQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01298712;
- 90% Identity
- iTF_01298712;
- 80% Identity
- iTF_01298712;