Rneb032779.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- -
- Assembly
- GCA_948150685.1
- Location
- OX411311.1:65877839-65916146[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.6 3.4e+02 3.3 0.2 6 23 119 138 116 138 0.87 2 16 3.1 6.5e+02 2.5 0.6 1 21 238 258 238 262 0.88 3 16 0.0002 0.041 15.7 0.1 2 21 319 338 318 342 0.90 4 16 0.32 66 5.6 1.6 3 23 359 380 357 380 0.96 5 16 0.55 1.2e+02 4.8 1.4 1 22 385 406 385 409 0.89 6 16 0.24 49 6.0 0.4 2 23 419 441 418 441 0.96 7 16 0.069 14 7.7 0.3 1 21 446 466 446 467 0.94 8 16 0.003 0.63 12.0 2.5 1 23 510 531 510 531 0.95 9 16 2.6e-05 0.0054 18.5 0.3 1 23 537 560 537 560 0.96 10 16 0.0055 1.2 11.1 2.0 3 23 568 588 566 589 0.94 11 16 6.5e-05 0.014 17.2 1.6 1 23 595 617 595 617 0.98 12 16 4.6 9.8e+02 1.9 0.1 1 23 622 646 622 646 0.80 13 16 0.52 1.1e+02 4.9 0.6 1 17 652 668 652 669 0.93 14 16 0.0061 1.3 11.0 7.7 2 23 703 724 702 724 0.96 15 16 0.0019 0.41 12.6 2.6 1 21 730 750 730 755 0.93 16 16 2.1 4.5e+02 3.0 0.1 1 20 761 781 761 785 0.68
Sequence Information
- Coding Sequence
- ATGCCATACCACTATGCGGGGCCTGGACACCTACGTGGCTCACAGGAGAGGCCAAATGCAGACCTGACCGCGAGAAGAGGGCCCACGACCTTCTTCTCCTCCTTGAACTTGCAGAGCAGCAGTAAGTCCTTGTGGTCTGCGAGTGCTGCCAGCGACGCCGTGGAGGACCAGGTTGAAGAGAGAAGAGAGATTCCACCACCGGGTCACACTGGAGGAAAGTGGAAACCGGAACAGACAGAAATATCAGAGCATCAGGTCAGTACACAGGTACCACCTCCAGACCATACCCGGGGCAAGTGGGGCCCTGCGGAACGGCCATGGGGTCAGCTGCAGAAAGGATATTGGTGTGGTCCCTGCAACAGGAGACTGAGCTCAAGGGTGGTCTACGAGAGGCACATCAGGTCGGAGCTTCACTTTAAGAGGACTAATCAGTGGCCGGGGCAGGACCTTGGCCGCAGGAACAGGGTCAGAACCAGAGCTATCCTGGCCACCTCGCTCAAGGCCATCAACAGGAGGTATAGGAAGGAGAAGCAGCCAAAGGAGCTGATACGGAAAAAGGGAGGCACGATGGTGTGTGAGGTATGCAAGTGCAAGGTTTGGCCCCACCTGATCGGAAAGCACTTGGTCTCCCATTACCACTACAGGCATCGAAGAGCTGGTTCGGAGGCCCTCGTCTTCCAGAACATGGACAGCGTGGTAAGGCAAGCTCCATTCCAGTGCGGCCTGTGCAAGTTCTATACCAACACCTTCACCGATTTCATTGAACATTGGGCTTCTGATATGCATCGTCAGGCAGATCTCAAGTTGGAGGGCAGATATTGGTGCTGCATTTGTAAGTGCAGTTGCGATAGCTCTGTAGCCATGGGCTTCCACATAGAGAGCGAAGGTCACAAAGAGATGGTCTCTGTCATTAACAGGTCGGTGCCGATTGTCATCCAGAAGAGGATCTTACTCCAGTGCGAGGTCTGCTCCAGGAGTTTCAGGTACAATATGGAACTGAAGGCCCACGCCAGGGCCTGGGGCCACGAACAAACCAAGAATAGTGGGTCCGACTCCTACCAGGAAGTTACCGCCTGCGAAGATTGCGACTTCCGAGGACACTCACTCCTCTCTTATCAACGTCATCTGCGGATGAAACACGGGAAGGAAATACACTTCTGCAGAAGGTGTAATGCCCGCTTCGACAGCTTAGAAGAAGCGCGAAGACACAGGAAGGAAGCGGAACATCGCGATGCCGGCCCCAAGGTTGACAAGCAATGTCCGCACTGCTTCCTTATCGTCCGGGGGCTGTTGGCTCTCAAGGAGCACCTCCAGACTGAGCACCCTGAGCGGCGACATCGCTGCCTTCGATGCGGTGCAGACTTTGTCCTCAAGCAGGAACTGACGCAGCACGTCAAGAACGGACGCTGCAGCCCTAGTATTAGCGACAGAGCCCACAAGTGCATCAAATGTCAGTTCTCGACTGATTCAGAGGCCGAGCTTTTGCTCCACAACATCCTCCACCGTGAACCCGACGAGCAGCAGCGCTATTTGTGTTTTTACTGCGACAAGTACTTCAAGAAAGACACTCTACGTAATCACGTTAAAGTGCATACAACCGAAAGGAACTTCATCTGCCAAATTTGTGAACTAAGCTTCAGTAGAAGGGACGCTTTGGCCAAACACACCTCTAGGGTCCATGAGATGTCTCGTTGCGTGGCTTGCAGGCTTTGCGCCGCTCAGTTCGCCACTAGTAAGCACCTCAGCCGTCACATGTCAATCCACCACGAAAGGACCAAGAACTTCTCTTGTTCCGAGTGTTCATCCCGGTTTTACAATAAGGCCAGTTTAGAGAAACACATTCAGCGACACCAGGGCAAGAAATACCCATGCGATCTCGAAGGCTGCATCTTCAAGGGTCGGTCTGAAGCTGAGCTGCGGACACACAGGGCGACACACGGCACTGAGAGGAACTATCATTGCAGGCATTGTCAGTATTCTGCCAAGACTAGGGCACAGCTAACCAATTTAGAGAGGATTGAACGCCATGCAAATGTGACACTTGGTTGTCGAATGGTTGAAGTCTGGCATATCAAGTCACAGCACACTGAAGAAGGTATGGCGCTCAGCTGTCCGCACTGCGACTTTACTACCAAGAACAGAACTCACCTCCACAGGCATACCAACCTTCACACTGGGCAAAAGCCTTTTAGATGTCCGCATTGTCCCTTTTCCTGCACTCTTTTAGAGAACCTGAGGAAGCATGTGATATCCTCAAAATTGCATCCTGGCAAGTTCTTGTACGAATGTCCGGATTGCGACGACCTGAAGACTAACCTGTCGAAGGTGCTGAAAGCCCACCTGGTCTCAGTTCACGGGAGGAGTACCTCAGAGGCTAATGCCCACATCTCTGGGTTACATCGTCCTGAGCCAGAGGACCCTGAACCGCAGGCTCTTGTTCCAGTTCCACCTAACAGGAGAAAGAAGAGTTTTGCCGCCCCAGGGCGGGATCAAGAAGAGGAGCAATTGCCAACCCTCGCTTCTGTGGCTTTGGCGTCCAACGAAGAGGATGTCATCTTCATAGAGGTCGATGGAGGGCTGGAGAGTGTCCTCTACCAGCAGTCGGACCACCTGGAGGCCTACCCGCCGGGCAGGGTATGA
- Protein Sequence
- MPYHYAGPGHLRGSQERPNADLTARRGPTTFFSSLNLQSSSKSLWSASAASDAVEDQVEERREIPPPGHTGGKWKPEQTEISEHQVSTQVPPPDHTRGKWGPAERPWGQLQKGYWCGPCNRRLSSRVVYERHIRSELHFKRTNQWPGQDLGRRNRVRTRAILATSLKAINRRYRKEKQPKELIRKKGGTMVCEVCKCKVWPHLIGKHLVSHYHYRHRRAGSEALVFQNMDSVVRQAPFQCGLCKFYTNTFTDFIEHWASDMHRQADLKLEGRYWCCICKCSCDSSVAMGFHIESEGHKEMVSVINRSVPIVIQKRILLQCEVCSRSFRYNMELKAHARAWGHEQTKNSGSDSYQEVTACEDCDFRGHSLLSYQRHLRMKHGKEIHFCRRCNARFDSLEEARRHRKEAEHRDAGPKVDKQCPHCFLIVRGLLALKEHLQTEHPERRHRCLRCGADFVLKQELTQHVKNGRCSPSISDRAHKCIKCQFSTDSEAELLLHNILHREPDEQQRYLCFYCDKYFKKDTLRNHVKVHTTERNFICQICELSFSRRDALAKHTSRVHEMSRCVACRLCAAQFATSKHLSRHMSIHHERTKNFSCSECSSRFYNKASLEKHIQRHQGKKYPCDLEGCIFKGRSEAELRTHRATHGTERNYHCRHCQYSAKTRAQLTNLERIERHANVTLGCRMVEVWHIKSQHTEEGMALSCPHCDFTTKNRTHLHRHTNLHTGQKPFRCPHCPFSCTLLENLRKHVISSKLHPGKFLYECPDCDDLKTNLSKVLKAHLVSVHGRSTSEANAHISGLHRPEPEDPEPQALVPVPPNRRKKSFAAPGRDQEEEQLPTLASVALASNEEDVIFIEVDGGLESVLYQQSDHLEAYPPGRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00764245;
- 90% Identity
- iTF_00764245;
- 80% Identity
- -